Plant FIBer expression Database

Lus10028771 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21720 89 / 1e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017512
[exp]
186 / 1e-60 AT4G21720 116 / 1e-34 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G041700
[exp]
100 / 4e-27 AT4G21720 158 / 8e-51 unknown protein
PFAM info
Representative CDS sequence
>Lus10028771 pacid=23177155 polypeptide=Lus10028771 locus=Lus10028771.g ID=Lus10028771.BGIv1.0 annot-version=v1.0
ATGATACCGCAGCAATGGTCTCAACCCTGTGGCACCGAATGCACCCACAAATATGCAGCCCTAACTCAGATTCCGTATTTAGATCTTCGATTGATACAGC
GTTGGAAAATTTTGGGGAGGGGTGGGGGGGGGCATTTTGTCAGGCAGCTAGACTTCATTGTTAGGGCGCTGAAGATGATGGCAAATGATAAGTCTTTCAT
CTTTCACGTACTCAGTCTTCGCTCTTGGGAGGGAGAGTATTTTGCAAGAAAGGTTGTAATGCTGATGGCGACACATGGGAAGAGTGTGAGTTTCCATATT
CCTACTGCCCCTTGCGCTTATGATATGCAATTGGTAAAACAGGACTCAAACTTTGGCTCGGAAGCTTGTGAAGAGATATGCTACAAGGATCCAGTGTTAA
AGAACCAGCAATGGAGTGCCTACATTGACCGATCTCCAGGAGCTGCTAGCTACTCAGAGGAATGCTTCCATGCCTGTGTATCTGGCTGTGGCTATAAGTT
TGCAATCAACAAAGATAAAGTTGATCAGCTTCGTCCACACCGGCCATGCAAGCCTCCGGCTCAAGAGAAGCCAGTCTCTGTTAACAAGTCTCCCATTACC
AGGGTAAAGGACGAACAGGAAGACGTGCCTTGCACTTCTGCGTAG
AA sequence
>Lus10028771 pacid=23177155 polypeptide=Lus10028771 locus=Lus10028771.g ID=Lus10028771.BGIv1.0 annot-version=v1.0
MIPQQWSQPCGTECTHKYAALTQIPYLDLRLIQRWKILGRGGGGHFVRQLDFIVRALKMMANDKSFIFHVLSLRSWEGEYFARKVVMLMATHGKSVSFHI
PTAPCAYDMQLVKQDSNFGSEACEEICYKDPVLKNQQWSAYIDRSPGAASYSEECFHACVSGCGYKFAINKDKVDQLRPHRPCKPPAQEKPVSVNKSPIT
RVKDEQEDVPCTSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G21720 unknown protein Lus10028771
[exp]
0 1
AT5G57860 Ubiquitin-like superfamily pro... Lus10036598
[exp]
6.0 0.7819
AT3G26980 MUB4 membrane-anchored ubiquitin-fo... Lus10032014
[exp]
9.5 0.7335
AT1G17030 unknown protein Lus10024442
[exp]
15.0 0.7665
AT3G61113 Ubiquitin related modifier 1 (... Lus10036551
[exp]
21.7 0.7761
AT3G29130 unknown protein Lus10038450
[exp]
26.4 0.7018
AT3G02100 UDP-Glycosyltransferase superf... Lus10015752
[exp]
26.5 0.6517
AT3G11591 unknown protein Lus10016986
[exp]
26.8 0.7332
AT3G58680 MBF1B, ATMBF1B multiprotein bridging factor 1... Lus10017945
[exp]
27.0 0.7239
AT4G39235 unknown protein Lus10004160
[exp]
31.6 0.7239
AT5G40080 Mitochondrial ribosomal protei... Lus10034241
[exp]
33.0 0.6715

Lus10028771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.