Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63850 626 / 0 BTB/POZ domain-containing protein (.1) AT5G60050 366 / 3e-120 BTB/POZ domain-containing protein (.1) AT3G50780 333 / 6e-107 unknown protein AT2G13690 238 / 1e-70 PRLI-interacting factor, putative (.1) AT3G05675 80 / 9e-16 BTB/POZ domain-containing protein (.1.2) AT4G10800 44 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017511 [exp] 1065 / 0 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 780 / 0 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 345 / 2e-111 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 340 / 4e-110 AT3G50780 602 / 0.0 unknown protein Lus10023336 [exp] 337 / 2e-108 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10016789 [exp] 266 / 1e-83 AT3G50780 408 / 1e-140 unknown protein Lus10020892 [exp] 223 / 9e-65 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10033484 [exp] 220 / 2e-63 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10040458 [exp] 104 / 2e-23 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100900 [exp] 783 / 0 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 729 / 0 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G129700 [exp] 357 / 5e-116 AT3G50780 623 / 0.0 unknown protein Potri.001G233900 [exp] 349 / 2e-113 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 349 / 4e-113 AT3G50780 654 / 0.0 unknown protein Potri.005G058700 [exp] 275 / 4e-84 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.007G109300 [exp] 268 / 6e-82 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.004G154600 [exp] 111 / 9e-26 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.006G202900 [exp] 67 / 1e-11 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G086100 [exp] 64 / 2e-10 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10028772 pacid=23177248 polypeptide=Lus10028772 locus=Lus10028772.g ID=Lus10028772.BGIv1.0 annot-version=v1.0 ATGGCCAGAACCACCACCACCACCACTAAAAAATTTACTTCCTCCTCCGCCGCTTCCTCTCAACCCATTAAACCCGAACACCGCCAAACCACAGTCTCCA CTCCTTCAGCTCAACCCCCTCTTCCTCTCCCTCCGTCCGGCCTCTTGAATCGCTCCCGGAGTGGCCGGAAGCTCCACCCTCCGACCATCGTCTCCCCTGA GAAATCCTCCTGGTGCTGCCCTGCCGCTTCCTCCAAACCCATTATCCACTCTCCTCCCCGCCGCCAGTTGCCCGACTCCAAGATCCGGTTCTCTTCCGGC GGATTTTCCCCCGTCATGGACTTCGCAGCTCCCAACGGCCACCACTTATCTTACGAGTCTTCTACCGGTCCTTCTACTTTCCCGTCCAGCTTCACCAAGT TCAACTCTGCTCTCACGGCGGGTCTCCTCAACCCGCTGTCACCTCCACCCGACAGGATGACCCGATCCAGCCCCACCTTGTTCGAAATGATGGCCAGCGA GCACGACATTAATCAGCCTAAGTCCTCCCAGACTCCGATCACGATTACTGCTCCTCCTCATGTCCCAATCTCCAAACTTCCTCAACCCCAAGCGCCCGTT CAGGACCGGCAGACGGCTGCATTGCAGCGAATCGCTGATATCCTGGGCAACCGGAGCCCCGGGAGCCAGTTCAATGATTCGTCCTCTAGCGATGTGAAGC TGACTTTGAGTTCTAAGGACGGGATCGGCGTCTCGATCAGTGTTCACAGGCAGATCCTGGTGGCACACAGCAGGTTCTTCGCGGTGAAGCTCTCCGATCG GTGGGCGAAACAACAGCAGAAACCTTCTTCCGGACCTTACGGTGTGGAGATCGCCGATTGTGATGATATCGAGGTTTACATTGAGACTTTGCGGTTAATG TACTCCAAGGATCTCAGGAGGAGACTCATGAAGGACGATGTTACCAAAGTTCTTGGCATTCTCAAGGTTTCAGCAGCAATAGGGTTTGATGCTGGAGTTC TATCTTGTTTGGAGTACTTGGAAGCAGCTCCATGGGCCGAGGAGGAAGAGGACAAAGTAGCTTCACTTCTATCAGAGCTACGTCTAGAAGGGGTAGGGGC AGGGGAAGTTCTAAAGAGGATGTCTGTTGAAGTAAGCAATGGAGGAGTAGAAGAGAACGGTACTGATAATAACGAGGAAGTGCTTCTCAAGCTTCTGCAC GTAGTTCTTGAAGGAAAAGACGAGAAAGCTCGACGAGAAATGAAAGGACTTGTTGCAAAAATGCTCCGGGAGAGTTCCTCGCAGACCGATCTTCGGAAGG AGTCTTTATACTCGGCTTGCGAAGGGTGTATGCAACTGCTTCGGACGCATTTTCTCGAGGCAGCATCAGGGAAGTTGAAGGATGCTGGTCAGATCGCTCG ACAAGCCGACAATCTGCATTGGTTGTTGGATATTATGATCGACAGGCAAATAGCCGAGGAGTTTCTCAAAACATGGGCGTCGGAGACTGAACTTTCGGAA GCACATTCCAAGATTCCTGCTGTACATAGGTACGAGGTCAGTAGGGTTACGGCGAGGCTGTTTGTTGGGGTTGGGAAAGGGCAGATGTTGGCTTCGAAAG AGGCGAGGTGTATGCTTCTGCAGACATGGCTGGGTCCTTTCTACGACGATTTCGGATGGATGAGAAGGGCACATAAGGGTCTCGACAGGCATTTGATTGA AGACGGTCTTGGTAACACCATTCTGACTCTGCCTCTATCTTGGCAACAAGATATTTTGCTTGCCTGGTTCGATCGGTTTCTGAATTCGGGCGAAGATTGT CCGAACATTCAGAGAGGATTTGAGATCTGGTGGAGACGGGCGTTCTGGAGGCGCACTGGGGAGCAAGGACGGACACGGTCTTTTAGAGTCGTTTCCACAA ATGCTGATAACTTGTGA
AA sequence Show only first row Show all	>Lus10028772 pacid=23177248 polypeptide=Lus10028772 locus=Lus10028772.g ID=Lus10028772.BGIv1.0 annot-version=v1.0 MARTTTTTTKKFTSSSAASSQPIKPEHRQTTVSTPSAQPPLPLPPSGLLNRSRSGRKLHPPTIVSPEKSSWCCPAASSKPIIHSPPRRQLPDSKIRFSSG GFSPVMDFAAPNGHHLSYESSTGPSTFPSSFTKFNSALTAGLLNPLSPPPDRMTRSSPTLFEMMASEHDINQPKSSQTPITITAPPHVPISKLPQPQAPV QDRQTAALQRIADILGNRSPGSQFNDSSSSDVKLTLSSKDGIGVSISVHRQILVAHSRFFAVKLSDRWAKQQQKPSSGPYGVEIADCDDIEVYIETLRLM YSKDLRRRLMKDDVTKVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEEEEDKVASLLSELRLEGVGAGEVLKRMSVEVSNGGVEENGTDNNEEVLLKLLH VVLEGKDEKARREMKGLVAKMLRESSSQTDLRKESLYSACEGCMQLLRTHFLEAASGKLKDAGQIARQADNLHWLLDIMIDRQIAEEFLKTWASETELSE AHSKIPAVHRYEVSRVTARLFVGVGKGQMLASKEARCMLLQTWLGPFYDDFGWMRRAHKGLDRHLIEDGLGNTILTLPLSWQQDILLAWFDRFLNSGEDC PNIQRGFEIWWRRAFWRRTGEQGRTRSFRVVSTNADNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63850			BTB/POZ domain-containing prot...		Lus10028772 [exp]	0	1
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	4.5	0.9393
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10028922 [exp]	5.3	0.9162
AT3G16850			Pectin lyase-like superfamily ...		Lus10016837 [exp]	9.3	0.9327
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	9.6	0.9375
AT1G76240			Arabidopsis protein of unknown...		Lus10016005 [exp]	14.0	0.9274
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	14.1	0.9207
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	14.3	0.9293
					Lus10024349 [exp]	16.1	0.9285
AT4G14380			unknown protein		Lus10021182 [exp]	16.2	0.8635
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10027679 [exp]	16.4	0.9212

Compare expression of checked genes

Lus10028772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.