Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61460 154 / 4e-48 BRH1 brassinosteroid-responsive RING-H2 (.1) AT1G63840 127 / 1e-37 RING/U-box superfamily protein (.1) AT5G41400 111 / 2e-31 RING/U-box superfamily protein (.1) AT4G11360 97 / 5e-26 RHA1B RING-H2 finger A1B (.1) AT4G11370 97 / 5e-26 RHA1A RING-H2 finger A1A (.1) AT4G00305 87 / 2e-22 RING/U-box superfamily protein (.1) AT3G43430 80 / 3e-19 RING/U-box superfamily protein (.1) AT5G20885 76 / 8e-18 RING/U-box superfamily protein (.1) AT2G04240 66 / 8e-14 XERICO RING/U-box superfamily protein (.1.2) AT1G23980 68 / 1e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017510 [exp] 281 / 4e-98 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1) Lus10032290 [exp] 214 / 7e-72 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1) Lus10024657 [exp] 210 / 3e-70 AT3G61460 200 / 4e-66 brassinosteroid-responsive RING-H2 (.1) Lus10036378 [exp] 127 / 2e-37 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10008283 [exp] 70 / 3e-15 AT3G61460 77 / 5e-18 brassinosteroid-responsive RING-H2 (.1) Lus10029178 [exp] 70 / 2e-14 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10043353 [exp] 68 / 2e-14 AT5G20885 157 / 4e-49 RING/U-box superfamily protein (.1) Lus10019507 [exp] 67 / 3e-14 AT5G20885 162 / 5e-51 RING/U-box superfamily protein (.1) Lus10012987 [exp] 68 / 8e-14 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101000 [exp] 198 / 1e-65 AT3G61460 171 / 9e-55 brassinosteroid-responsive RING-H2 (.1) Potri.003G130900 [exp] 188 / 8e-62 AT1G63840 197 / 4e-65 RING/U-box superfamily protein (.1) Potri.014G087700 [exp] 143 / 4e-44 AT3G61460 220 / 2e-74 brassinosteroid-responsive RING-H2 (.1) Potri.002G161900 [exp] 142 / 9e-44 AT3G61460 234 / 7e-80 brassinosteroid-responsive RING-H2 (.1) Potri.007G086300 [exp] 73 / 1e-16 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.006G217000 [exp] 71 / 6e-16 AT5G20885 138 / 8e-42 RING/U-box superfamily protein (.1) Potri.011G150800 [exp] 71 / 8e-16 AT3G61460 69 / 1e-14 brassinosteroid-responsive RING-H2 (.1) Potri.007G086200 [exp] 70 / 3e-15 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.014G170400 [exp] 68 / 8e-15 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2) Potri.009G170460 [exp] 67 / 1e-14 AT4G38140 85 / 9e-22 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10028773 pacid=23177300 polypeptide=Lus10028773 locus=Lus10028773.g ID=Lus10028773.BGIv1.0 annot-version=v1.0 ATGGGGTTTCCGGCCACGGAGCTGCTGCTTCTTCCCAAGCTCCTAATCCATGCGCTCTCCCTCCTCTTCATTTTCCAGCGGATAATCACCTTGCTCTTCC GCTACCTAGGCCTCCCTAATTTCTTAAATCCCAACTCCTCCGCCGATCAAGTCTCCAATTCGCCTGCAGTGAGTTATCCGGAGTTCCAGCGATCCATGTC GGCGATCCTCATCCGCGAGATCCTCCCCGTGGTGAAGTTCGCCGACCTAATCGACCCGCCGGAGAGCTGCGCGGTGTGCCTGTACGAGTTCGAAGATGAG GATGAGATCAGGATTCTGGCGAATTGCAAGCACGTTTTCCACAAGGAGTGCCTGGACAGGTGGGTGGGGTATGAGCGGAGAACGTGCCCTATGTGCCGGA CGGCGGTGATTCCGGAGGATATGCAGGAGAGCTTCAACGATAAGTTCTGGGCGGCTTCTGGGATCCCTGATTTTTACGGGGAGTTGTCGCCAATTTCTGG ATAG
AA sequence Show only first row Show all	>Lus10028773 pacid=23177300 polypeptide=Lus10028773 locus=Lus10028773.g ID=Lus10028773.BGIv1.0 annot-version=v1.0 MGFPATELLLLPKLLIHALSLLFIFQRIITLLFRYLGLPNFLNPNSSADQVSNSPAVSYPEFQRSMSAILIREILPVVKFADLIDPPESCAVCLYEFEDE DEIRILANCKHVFHKECLDRWVGYERRTCPMCRTAVIPEDMQESFNDKFWAASGIPDFYGELSPISG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10028773 [exp]	0	1
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10010501 [exp]	3.3	0.7710
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10000190 [exp]	6.5	0.7599
					Lus10024618 [exp]	8.3	0.7299
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10024675 [exp]	9.2	0.7188
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10025976 [exp]	9.9	0.6882
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	12.0	0.7053
					Lus10010697 [exp]	13.2	0.7053
AT5G20610			unknown protein		Lus10025003 [exp]	14.2	0.7053
					Lus10008327 [exp]	15.2	0.7053
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	15.5	0.6980

Compare expression of checked genes

Lus10028773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.