Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41390 324 / 5e-112 PLAC8 family protein (.1.2) AT1G63830 320 / 1e-110 PLAC8 family protein (.1.2.3) AT4G23470 302 / 7e-104 PLAC8 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017509 [exp] 374 / 1e-131 AT1G63830 379 / 1e-134 PLAC8 family protein (.1.2.3) Lus10014759 [exp] 276 / 9e-89 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10018826 [exp] 262 / 6e-87 AT4G23470 328 / 2e-113 PLAC8 family protein (.1.2.3) Lus10036377 [exp] 114 / 3e-28 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10000149 [exp] 0 / 1 AT5G41390 103 / 3e-28 PLAC8 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130700 [exp] 344 / 4e-120 AT1G63830 341 / 1e-119 PLAC8 family protein (.1.2.3) Potri.001G101100 [exp] 338 / 6e-118 AT1G63830 353 / 2e-124 PLAC8 family protein (.1.2.3) Potri.014G087600 [exp] 299 / 3e-102 AT5G41390 327 / 8e-114 PLAC8 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10028774 pacid=23177150 polypeptide=Lus10028774 locus=Lus10028774.g ID=Lus10028774.BGIv1.0 annot-version=v1.0 ATGGCTTCCCAGGCGCATTTGGACAAGATGCAGCTCCGCCAGAATTATCGCAATCTCTGGCACAGCGATCTTGTGAGCACTATCCAGGCTGACACCCCAT GCCTGTTCCCTAGTTCAGTTGAGCTAACTAACAGGATTTTGGATAATCATGGATGGTTCCTAAACGCCAGGAGCTCAGACATATCTGAGTTCCTTGAGCT TCAGTTGTTGCTAATCGACTCCTACGTCTCTTGTAGTGGACCTTGTGTATCATATTTGCTCCGCAAACGGGCACTCTACAATGACATGTCAAGGTATGTT TGCTGTGCTGGTTATATGCCTTGTAGTGGAAGATGCGGTGAAAGTAAGTGCCCAGAGTTCTGCCTTTGCACTGAGGTCTTCTTGTGCTTTGGAAATTCTG TAGCGTCCACTCGGTTTATGCTGCAAGATGAATTCAACATTCAGACAACTAAGTGTGACAACTGCATTATTGGTTTCATGTTCTGCCTCCAACAAATCGC ATGTATATTCTCCATAGTCGCCATGATTGTTGGAAGCGAGGAGATTTCGGAGGCATCCCAGTTGCTATCTTGCTTGTCTGATATGGTCTATTGCACGGTT TGTGCTTGTATGCAGACACAACACAAGATTGAAATGGACAAACGAGATGGCAAGTTTGGACCACAACCTATGACAGTGCCGGCTGTGCAACAGATGTCGC GTCTGGACCAGCAATTCCCTCCTGCTGCTGGGTATCCACCTCAACCAGTTTACGGCTACCCGCCTCCTCAGTCCCAAGGCGGCTACCCTCCTGCTGGATA TCCTCCGGCAGGGTACCCTCCACCGGCTTACCCTCCTTCAAACTATCCTCCACCTGGCTACCCACCAAAGTGA
AA sequence Show only first row Show all	>Lus10028774 pacid=23177150 polypeptide=Lus10028774 locus=Lus10028774.g ID=Lus10028774.BGIv1.0 annot-version=v1.0 MASQAHLDKMQLRQNYRNLWHSDLVSTIQADTPCLFPSSVELTNRILDNHGWFLNARSSDISEFLELQLLLIDSYVSCSGPCVSYLLRKRALYNDMSRYV CCAGYMPCSGRCGESKCPEFCLCTEVFLCFGNSVASTRFMLQDEFNIQTTKCDNCIIGFMFCLQQIACIFSIVAMIVGSEEISEASQLLSCLSDMVYCTV CACMQTQHKIEMDKRDGKFGPQPMTVPAVQQMSRLDQQFPPAAGYPPQPVYGYPPPQSQGGYPPAGYPPAGYPPPAYPPSNYPPPGYPPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10028774 [exp]	0	1
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10025424 [exp]	1.4	0.8201
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	1.4	0.8636
					Lus10027917 [exp]	16.1	0.7802
AT5G55150			Protein of unknown function (D...		Lus10007081 [exp]	21.4	0.7061
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	29.7	0.7237
AT5G50175			unknown protein		Lus10043318 [exp]	32.6	0.7571
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10035673 [exp]	33.9	0.7794
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043117 [exp]	36.9	0.6862
AT4G17486			PPPDE putative thiol peptidase...		Lus10043293 [exp]	38.5	0.7315
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	41.0	0.7378

Compare expression of checked genes

Lus10028774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.