Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23460 1489 / 0 Adaptin family protein (.1) AT4G11380 1488 / 0 Adaptin family protein (.1.2) AT5G11490 327 / 2e-98 adaptin family protein (.1.2) AT3G55480 128 / 7e-30 AP-3beta, PAT2 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) AT4G31490 65 / 2e-10 Coatomer, beta subunit (.1) AT4G31480 64 / 3e-10 Coatomer, beta subunit (.1.2) AT1G60070 54 / 7e-07 Adaptor protein complex AP-1, gamma subunit (.1.2) AT5G22780 54 / 7e-07 Adaptor protein complex AP-2, alpha subunit (.1) AT5G22770 53 / 8e-07 ALPHA-ADR alpha-adaptin (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017508 [exp] 1701 / 0 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 1604 / 0 AT4G23460 1560 / 0.0 Adaptin family protein (.1) Lus10032286 [exp] 1601 / 0 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10022125 [exp] 342 / 4e-100 AT5G11490 1337 / 0.0 adaptin family protein (.1.2) Lus10011675 [exp] 219 / 3e-59 AT5G11490 897 / 0.0 adaptin family protein (.1.2) Lus10023408 [exp] 128 / 9e-30 AT3G55480 1320 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10040289 [exp] 127 / 2e-29 AT3G55480 1331 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10015105 [exp] 77 / 6e-14 AT4G31480 1650 / 0.0 Coatomer, beta subunit (.1.2) Lus10031570 [exp] 76 / 7e-14 AT4G31480 1659 / 0.0 Coatomer, beta subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130400 [exp] 1564 / 0 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.001G101400 [exp] 1553 / 0 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.006G243100 [exp] 329 / 3e-99 AT5G11490 1355 / 0.0 adaptin family protein (.1.2) Potri.010G202800 [exp] 124 / 1e-28 AT3G55480 1246 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Potri.018G007400 [exp] 80 / 5e-15 AT4G31480 1672 / 0.0 Coatomer, beta subunit (.1.2) Potri.006G273300 [exp] 79 / 2e-14 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2) Potri.009G150300 [exp] 57 / 6e-08 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.004G189700 [exp] 56 / 1e-07 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0545 [flax] [poplar] APCOP-app_sub PF09066 [flax] [poplar] B2-adapt-app_C Beta2-adaptin appendage, C-terminal sub-domain CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region CL0159 [flax] [poplar] E-set PF02883 [flax] [poplar] Alpha_adaptinC2 Adaptin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028775 pacid=23177289 polypeptide=Lus10028775 locus=Lus10028775.g ID=Lus10028775.BGIv1.0 annot-version=v1.0 ATGAGCGGCCACGATTCCAAGTACTTCTCCACGACCAAGAAGGGAGAAATCCCTGAACTTAAAGAGGAGCTCAATTCTCAGTACAAGGATAAGAGAAAGG ATGCAGTTAAAAAAGTGATTGCTGCAATGACTGTTGGGAAGGATGTCTCATCACTATTCACAGATGTGGTGAACTGCATGCAAACTGAAAATCTGGAGCT CAAGAAGCTCGTTTATCTATACCTCATTAACTATGCCAAAAGCCAGCCTGATCTTGCAATACTTGCTGTTAATACTTTTGTCAAGGATTCACAAGATCCA AATCCCTTAATTCGAGCTTTGGCTGTTCGGACAATGGGCTGCATTCGTGTTGACAAAATCACTGAGTACTTGTGTGATCCTCTTCAGCGGTGCCTCAAGG ATGATGATCCTTATGTTCGCAAGACAGCAGCAATTTGTGTTGCAAAACTGTTCGACATAAATGCTGAATTAGTTGAAGATAGGGGTTTTCTTGATTCACT CAAGGATTTGATTTCAGACAATAACCCTATGGTGGTTGCTAATGCTGTTGCAGCTCTAGCAGAAATTCAAGAGAATAGTGCTAGACCCATTTTTGAGATT ACCAGTCAAACTCTTTCAAAGTTGCTTACTGCTCTAAATGAGTGCACAGAGTGGGGTCAAGTCTTTATTTTGGATGCACTTTCAAGATACAAGGCAACAG ATGCTCGTGAAGCTGAAAATATAGTGGAACGAGTCACTCCAAGGCTACAACACGCTAATTGTGCAGTTGTACTTTCAGCTGTTAAGATGATTCTTCAACA AATGGAACTCATTACGGGCACTGATGTAGTGCGGAATCTTTGCAAGAAGATGGCTCCTCCTCTTGTGACCCTTCTATCTGCAGAACCTGAAATTCAATAT GTTGCGTTACGAAACATAAACCTAATTGTTCAAAGGAGACCAATAATCCTTGCTCATGAAATTAAGGTGTTTTTCTGCAAGTACAATGATCCAATTTATG TCAAGATGGAGAAGCTTGAAATCATGATAAAACTCGCTTCTGACCGCAACATAGACCAGGTTCTGTTGGAGTTCAAAGAGTATGCAACAGAAGTTGATGT GGATTTCGTAAGAAAGGCTGTACGGGCCATTGGTCGCTGTGCTATAAAGTTAGAGAGGGCAGCTGAAAGATGCATTAGCGTTCTGCTTGAACTTATCAAG ATTAAAGTAAATTATGTGGTTCAAGAGGCTATTATTTTTATCAAAGACATATTTAGAAGATACCCAAATACATATGAATCTATCATTGCAACTCTGTGTG AGAGCTTAGATACTTTGGATGAACCAGAAGCCAAGGCATCCATGATCTGGATCATTGGTGAATATGCTGAAAGAATCGACAATGCTGATGAACTCCTTGA AAGCTTCTTGGAGAGTTTCCCTGAAGAACCTGCACAAGTGCAGTTGCAGTTATTGACTGCAACTGTCAAACTCTTCCTCAAGAAGCCAACTGAAGGCCCT CAGCAGATGATTCAGGTTGTTTTGAACAATGCCACCGTAGAGACAGATAATCCTGACCTAAGGGACCGTGCATATATATATTGGCGATTATTATCAACTG ATCCAGAGGCAGCTAAAGATGTTGTGTTAGCGGAAAAGCCAGTGATCAGTGATGATTCAAACCAACTCGATCCTTCTTTACTTGATGAGCTTCTTGCAAA CATCGCTACATTGTCCTCTGTGTATCACAAACCGCCAGAAGCATTCGTAACTCGTGTGAGAACACTGGCACAGAAGACTGATGATGACGACTATCCCGAT GGAGCTGAAGCCACTGAATCATCTTCCCATCCTGTCCATGGTGCGGCATCACCTGCAAGAAATGTTCCTCATGCTGGAACAAAGCAAATTATTCCTGTAC CAGCTGCTACCCCTCCACAGGCTGCCCCTGTCCCAGATTTGATGGGCGACCTTATGGGTTTGGATAACAGTGCAATTGTCCCTGTTGATCAACCTTCTAC TACTTCTGGCCCTCCCTTGCCTGTCGTATTACCAGCAGCAACTGCTCAAGGTTTACAAATAAGTGCACAGCTAACACGACGAGATGGAGAAATCTTCTAC AGCATGTTGTTTGAGAACAACACACAGATGCCACTCGATGGGTTCCTAATCCAGTTCAACAAGAATACACTTGGTCTTGCTGCCGGTGGACCGTTGCAGG TTCCACAACTGCAACCCGGTACATCAACAACCGCTCTCCTTCCCATGGTTATGTTTCAAAATGTGTCTGCCGGCCCTCCAAGCTCGCTTTTACAAGTAGC TGTTAAGAATAACCAACAGCAAGTATGGTACTTCAACGACAAAATCGCATTTCACGTTTTCTTCAGCGAGGATGGGAGGATGGAACGTGGATCCTTCCTC GAGACATGGAGGTCCCTGCCTGATGCAAACGAAATCTCGAAGGACTTCCCGAGCGTTGTGTTGAGCAGTGCAGACACAATGGTGGAACGGCTAGCTGCAT CGAACATGTTCTTCATCGCCAAGAGAAAGCAAGCGAACCAAGACGTATTCTACTTTTCGACAAAAATACCAGGGGGAGTTCCTTTCTTAGTTGAGGTAAC GTCAGTGATAGGAATCCCTGGAGTGAAGTGTGCGATCAAGACTCCCAACCCTGAAATGTCTCCTCTTTTCTTCGAGGCGGTTGAAGCTCTCCTCAATGCT TGA
AA sequence Show only first row Show all	>Lus10028775 pacid=23177289 polypeptide=Lus10028775 locus=Lus10028775.g ID=Lus10028775.BGIv1.0 annot-version=v1.0 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDP NPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLDSLKDLISDNNPMVVANAVAALAEIQENSARPIFEI TSQTLSKLLTALNECTEWGQVFILDALSRYKATDAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITGTDVVRNLCKKMAPPLVTLLSAEPEIQY VALRNINLIVQRRPIILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK IKVNYVVQEAIIFIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGP QQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVRTLAQKTDDDDYPD GAEATESSSHPVHGAASPARNVPHAGTKQIIPVPAATPPQAAPVPDLMGDLMGLDNSAIVPVDQPSTTSGPPLPVVLPAATAQGLQISAQLTRRDGEIFY SMLFENNTQMPLDGFLIQFNKNTLGLAAGGPLQVPQLQPGTSTTALLPMVMFQNVSAGPPSSLLQVAVKNNQQQVWYFNDKIAFHVFFSEDGRMERGSFL ETWRSLPDANEISKDFPSVVLSSADTMVERLAASNMFFIAKRKQANQDVFYFSTKIPGGVPFLVEVTSVIGIPGVKCAIKTPNPEMSPLFFEAVEALLNA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23460			Adaptin family protein (.1)		Lus10028775 [exp]	0	1
AT1G29370			Kinase-related protein of unkn...		Lus10015262 [exp]	1.0	0.9347
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10017361 [exp]	2.6	0.8962
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	3.5	0.9138
AT3G07660			Kinase-related protein of unkn...		Lus10036414 [exp]	6.5	0.9041
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10038231 [exp]	7.7	0.8712
AT1G73380			unknown protein		Lus10031316 [exp]	9.8	0.8982
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	9.8	0.8858
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10034465 [exp]	10.0	0.8607
AT1G51350			ARM repeat superfamily protein...		Lus10002562 [exp]	10.2	0.8795
AT4G16180			unknown protein		Lus10017062 [exp]	10.6	0.9020

Compare expression of checked genes

Lus10028775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.