Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35785 126 / 8e-36 RNA-binding (RRM/RBD/RNP motifs) family protein AT1G07350 103 / 3e-28 SR45a serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G64200 61 / 5e-11 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT1G73530 57 / 6e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 55 / 7e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52380 56 / 4e-09 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT5G54580 52 / 2e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G04280 52 / 7e-08 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT5G06210 50 / 8e-08 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT3G53460 52 / 9e-08 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017507 [exp] 289 / 4e-100 AT4G35785 123 / 4e-35 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10018202 [exp] 140 / 5e-39 AT1G07350 145 / 1e-41 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10040705 [exp] 134 / 2e-37 AT1G07350 163 / 2e-46 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10028400 [exp] 126 / 4e-36 AT4G35785 181 / 2e-57 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10041854 [exp] 125 / 4e-35 AT4G35785 179 / 6e-56 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040854 [exp] 72 / 2e-16 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005891 [exp] 69 / 2e-13 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1) Lus10003957 [exp] 56 / 4e-09 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10023191 [exp] 56 / 5e-09 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130301 [exp] 170 / 4e-53 AT4G35785 145 / 3e-43 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G248100 [exp] 131 / 1e-36 AT1G07350 125 / 2e-35 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G041700 [exp] 131 / 2e-36 AT4G35785 139 / 6e-39 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.005G105700 [exp] 127 / 2e-36 AT4G35785 158 / 4e-48 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G101500 [exp] 102 / 3e-27 AT4G35785 97 / 1e-25 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.011G130300 [exp] 59 / 8e-11 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 57 / 3e-10 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 57 / 4e-10 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G023800 [exp] 57 / 2e-09 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.003G074900 [exp] 54 / 5e-09 AT4G20030 164 / 2e-52 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10028776 pacid=23177133 polypeptide=Lus10028776 locus=Lus10028776.g ID=Lus10028776.BGIv1.0 annot-version=v1.0 ATGTCGCCTTTAAGGGAAGGAAGGCATGGAGCCTCCAAGTCTCCTCCTCCACGGGCCTCGGCGTCTCCTCCAAAAAGAAGAAGGTCCAGATCGCCACGAC GAAGCCGCTCCAGATCAAGGAGCCGAGATTCTGTTGATGCATCCAATCCTGGAAATAACCTCTATGTCACTGGTTTATCCACTAGAATTACCTCCAGTGA CCTGGAGAAGTTCTTTGGCAAGGAAGGAAAGGTTATGAACTGCAATCTTGTTTGCGATCCACGCTCCAAGGAATCCCGTGGATTTGTTTTTTTTGCTATC CAATCCAAAGATGATGCGCACCGCTCTATCAAGTACTTGAACCGTTCTGTCCTTGAAGGACGACTAGTCACTGTAGAAAAGGCTAAAAGGTCTCGTGGCA GGGACCCGACTCCGGGCAGGTATCAAGGCGTGAGAGAGAAACAAGGCGCTCTAGAAGCTACTCACCTCGCAGACGTGAACGAAGAGATAGAGATCCTTAC TCGAGGGATCTGCCTCCACGGCGAGGCAGATCCAGGTCTCCATCTGGTAAAAGGAGAGATGATCATCAGGACACACACAGAAGGCACAAGGAACCCTCTT TGTCGGCTGATCGCAGCAGCCTCCGTAGGTAGGAATCGGGACATGAAGAAAGAAGAACTGCTATGA
AA sequence Show only first row Show all	>Lus10028776 pacid=23177133 polypeptide=Lus10028776 locus=Lus10028776.g ID=Lus10028776.BGIv1.0 annot-version=v1.0 MSPLREGRHGASKSPPPRASASPPKRRRSRSPRRSRSRSRSRDSVDASNPGNNLYVTGLSTRITSSDLEKFFGKEGKVMNCNLVCDPRSKESRGFVFFAI QSKDDAHRSIKYLNRSVLEGRLVTVEKAKRSRGRDPTPGRYQGVREKQGALEATHLADVNEEIEILTRGICLHGEADPGLHLVKGEMIIRTHTEGTRNPL CRLIAAASVGRNRDMKKEELL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10028776 [exp]	0	1
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10005329 [exp]	25.3	0.6115
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10018060 [exp]	26.8	0.6264
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033870 [exp]	115.6	0.5268
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10012389 [exp]	151.3	0.5309

Compare expression of checked genes

Lus10028776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.