Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75060 179 / 2e-56 unknown protein AT1G19330 176 / 4e-55 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017506 [exp] 462 / 5e-168 AT1G75060 178 / 6e-56 unknown protein Lus10032725 [exp] 165 / 7e-51 AT1G75060 286 / 1e-98 unknown protein Lus10018805 [exp] 162 / 8e-49 AT1G75060 288 / 5e-98 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G101600 [exp] 292 / 9e-101 AT1G75060 178 / 7e-56 unknown protein Potri.003G130100 [exp] 288 / 2e-99 AT1G75060 178 / 8e-56 unknown protein Potri.014G041200 [exp] 187 / 2e-59 AT1G75060 317 / 3e-110 unknown protein Potri.002G133500 [exp] 187 / 2e-59 AT1G75060 312 / 2e-108 unknown protein Potri.005G088101 [exp] 94 / 4e-25 AT1G19330 55 / 9e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028777 pacid=23177278 polypeptide=Lus10028777 locus=Lus10028777.g ID=Lus10028777.BGIv1.0 annot-version=v1.0 ATGCTGGGGAGTGAGGTGTTGTCTAGGAGGATAGTTTCACCATTGTTCAGAGAGAGGGAGGAGAGTGGTGACGATGAGCTATCAGTTCTGCCAAGGCACA CAAAGGTCATTGTCACTGGTAACAACAGAACAAAGTCTGTTCTTGTGGGCTTGCAAGGCGTCGTCAAGAAGGCTGTTGGCCTTGGAGGTTGGCATTGGCT GGTTTTGAAAAACGGGGTTGAAGTGAAGTTGCAGAGGAATGCACTAAGCGTACTTGAACATCCGACGGGGAACGAAGTGGATGACGAATATGATTTTGAT ATCAGCAGTGGCTCTGACATTGGTGAAAAGGACCATGAATTCTCTAGCGGAGGTGAGTTCACCAAATTCAGCAGGCCAAGAGCTCGGCAGGCAAGGCCGT GCTACCCAGCAAAGTCGGCAACTCGTATCGGTTATAGGGATGTTCAGTCAATTATCCACACTTCTCGGGCAAAGGTGAACCTGGTAAAACTGGGGAAAGA GTCCTTGTGGAGATATTGCAGGCATTACAAGCTATCTGGGATCAACTGTTATTCAACAAGGGAACAGATGCTTGCTAGCGTGCAACACCATTTCAGTTCA ATGCAGCGAGTGGATGAAGCGCAAGTGGTGATGGATTTCATAATCCATGCAGCAAAGAGACGGAAACAGTTGAGTAAACCAGCCAAGTGA
AA sequence Show only first row Show all	>Lus10028777 pacid=23177278 polypeptide=Lus10028777 locus=Lus10028777.g ID=Lus10028777.BGIv1.0 annot-version=v1.0 MLGSEVLSRRIVSPLFREREESGDDELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEHPTGNEVDDEYDFD ISSGSDIGEKDHEFSSGGEFTKFSRPRARQARPCYPAKSATRIGYRDVQSIIHTSRAKVNLVKLGKESLWRYCRHYKLSGINCYSTREQMLASVQHHFSS MQRVDEAQVVMDFIIHAAKRRKQLSKPAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75060			unknown protein		Lus10028777 [exp]	0	1
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	2.4	0.9075
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	5.7	0.9184
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	9.5	0.8685
AT3G22520			unknown protein		Lus10041202 [exp]	10.6	0.8947
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	11.5	0.8803
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10026036 [exp]	12.8	0.8961
AT3G13620			Amino acid permease family pro...		Lus10010512 [exp]	17.7	0.8778
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	21.6	0.8702
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	21.6	0.8480
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10022456 [exp]	24.4	0.8612

Compare expression of checked genes

Lus10028777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.