Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45140 1711 / 0 NRPC2 nuclear RNA polymerase C2 (.1) AT4G21710 697 / 0 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT3G23780 460 / 6e-141 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) AT3G18090 442 / 2e-135 NRPD2B nuclear RNA polymerase D2B (.1) AT1G29940 281 / 9e-78 NRPA2 nuclear RNA polymerase A2 (.1) AT1G78190 156 / 2e-44 Trm112p-like protein (.1) ATCG00190 153 / 2e-37 ATCG00190.1, RPOB RNA polymerase subunit beta (.1) AT1G22270 126 / 8e-34 Trm112p-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017504 [exp] 2168 / 0 AT5G45140 1652 / 0.0 nuclear RNA polymerase C2 (.1) Lus10015446 [exp] 689 / 0 AT4G21710 2298 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10011182 [exp] 681 / 0 AT4G21710 2293 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10011322 [exp] 488 / 7e-159 AT5G45140 468 / 2e-153 nuclear RNA polymerase C2 (.1) Lus10026157 [exp] 403 / 7e-120 AT1G29940 1574 / 0.0 nuclear RNA polymerase A2 (.1) Lus10027166 [exp] 267 / 3e-73 AT3G23780 1435 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10039677 [exp] 259 / 1e-70 AT3G23780 696 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10017505 [exp] 204 / 8e-61 AT1G78190 175 / 6e-58 Trm112p-like protein (.1) Lus10032269 [exp] 189 / 1e-55 AT1G78190 186 / 3e-62 Trm112p-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003000 [exp] 1848 / 0 AT5G45140 1826 / 0.0 nuclear RNA polymerase C2 (.1) Potri.004G043200 [exp] 694 / 0 AT4G21710 2271 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Potri.018G019100 [exp] 483 / 5e-149 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.001G030750 [exp] 386 / 6e-114 AT1G29940 1674 / 0.0 nuclear RNA polymerase A2 (.1) Potri.005G165000 [exp] 171 / 2e-49 AT1G22270 165 / 4e-54 Trm112p-like protein (.1) Potri.002G096600 [exp] 145 / 2e-40 AT1G22270 169 / 2e-55 Trm112p-like protein (.1) Potri.013G142232 [exp] 159 / 5e-39 ATCG00190 2015 / 0.0 RNA polymerase subunit beta (.1) Potri.006G263900 [exp] 106 / 4e-25 AT3G23780 253 / 5e-77 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04567 [flax] [poplar] RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5 PF04566 [flax] [poplar] RNA_pol_Rpb2_4 RNA polymerase Rpb2, domain 4 PF04561 [flax] [poplar] RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 CL0167 [flax] [poplar] Zn_Beta_Ribbon PF03966 [flax] [poplar] Trm112p Trm112p-like protein CL0167 [flax] [poplar] PF04565 [flax] [poplar] RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 CL0167 [flax] [poplar] PF04563 [flax] [poplar] RNA_pol_Rpb2_1 RNA polymerase beta subunit
Representative CDS sequence Show only first row Show all	>Lus10028778 pacid=23177123 polypeptide=Lus10028778 locus=Lus10028778.g ID=Lus10028778.BGIv1.0 annot-version=v1.0 ATGGGCGCCGTTGAAGCCGAGAGGTCATCTGACGGAGAGGAAAACACGGTTGAGCAATTGATTGACAAGCAAAAGCTTGCCGCTCCAATAAAAAATCCAG TTGACAAGTTTCAGCTCGTCCCCGAGTTCTTGAAGGTTAGAGGATTGGTGAAGCAGCATCTGGATTCTTTTAATTACTTTGTAAATGTTGGTATAAAGAA AATAGTGCGAGCCAATGATCGCATTGTATCGACGATTGATCCTGGTATCTACATCAGGTTTAAAGATGTGAGGATCGGTAAGCCTACTGAGATAGACGAG GAAAGTGGTATTCACGCACTCACTCCACACTCATGCCGTCTATCTGATAGGACTTATTCTGCACCATTATTGGTGGATATAGAGTATATTTATGGAAGTA ATGATCAAAAGCAGAGAAAAGAGAAGCGTGATATGGTTATCGCGAAAATGCCAATCATGTTACGGAGTTCCTGTTGTGTTTTGTATCAAAAGGACGAAGC TGAACTTGCAAAACTTGGTGAATGCCCACTTGATCCTGGAGGTTATTTTGTCGTTAAGGGAACAGAGAAGGTGATCTTAATACAAGAGCAGCTTTCAAAG AACAGAATCATCATCGAGTCAGACAGGAAGGGGAACCTAATAGCATCTGTTACAAGTAGCACAGAAGCAACTAAGAGCAAAACAATTATCATGATGGAAA AGGGGAAGATGTATTTGTGTCTTAACCAATTCCCAGTGAAGATTCCGATAATGGTGGTCATGAAGGCTATGGGGATGGAAAGTGATCAAGAGGTTGTTCA GATGATAGGAAGAGATCCTCGATATAGTGCACTCCTTCTTCCTTCTCTTGAGGAATGTGCAAGTCAGCAGGTCTACACACAAGAGAAAGCCTTGAAATTC CTCGACTTTAAGAAAGATGGGAGAGCACTGTCAATCCTTAGAGACACATTTCTTGCTAATGTTCCGGTTCATAACAATAATTTTCGCCCAAAATGCATTT ATGTTGCTGTAATGCTCCGAAGGATGATGGAGGCTCTATTAAACAAGGATGCAATGGATGACAAGGATTATGTCGGCAATAAGAGATTAGAGCTGTCTGG CCAGCTAATTTCTTTGCTCTTTGAAGACTTGTTTAAGACGATGATCACAGAGACTGTAAAAAACATCGATGGCACTCTCAAGAAACAAAATCGATCTAGC CGTTTCGATCCTTCTATTGTTGGAACCAATTCTGAACGTGGGATTATTACAAATGGGCTGGAAAGAGCCCTCTCCACTGGTAATTGGGATGTCAAGCGCT TTAAAATGAACAGGAAAGGAGTTACACAGGTACTTGCTAGGTTATCTTTCATAGGTTCTTTGGGTTACTTGACAAGAATCTCACCACAATTTGAGAAGTC GAGAAAAGTGAGTGGACCTAGAGCATTGCAACCTAGTCAGTGGGGCATGCTTTGTCCTTGTGATACTCCAGAAGGTGAAGCTTGTGGGCTGGTGAAGAAC TTGGCCCTCATGACTCATGTTACCACTGATGAAGAGGATGGCCCGTTAATTTCCCTTGCACCGCTAACATTTGCGTATGAATGCTGTGGAATTCTTGCCG TCTTGCAAAAGTGCTATTGTTTAGGTGTTGAAGACCTGGAGCTTCTTACTGGGGAAGAACTCCACACTCCAAATTCTTACTTGGTTATATTCAATGGGCT GATTCTTGGCAAGCACAGGAGGCCTCAGCATTTTGCTCACGCAATGAGAAAGTTACGAAGAGCTTGCAAAATTGGCGAGTTTGTAAGCATTTTTGTGAAT GAAAAACAGCGCACTGTTTATATTGCTTCTGATGGTGGGCGGGTATGTCGTCCGCTGGTTATTGCGGACGAAGGCAAATCAAGAGTCAAAGAGCACCATA TGAAGGAGCTTTCGGATGGTGTACGGACATTTGATGACTTTTTACGAGAAGGGCTGATCGAGTATCTTGATGTCAATGAGGAGAATAATTCTTTGATTGC TTTATATGAAGGGGAAGCTACACCTGAGACAACTCACATTGAGATAGAACCTTTCACCATACTAGGTGTTATTGCTGGGCTGATTCCATACCCTCATCAT AATCAGTCACCAAGAAATACATATCAGTTATGTCGAATGGACACACTACTCTACTTGCTGGTGTATCCTCAACGTCCTTTGTTAACGACAAGGACTATTG AACTGGTAGGATACGATAAACTTGGAGCTGGCCAGAATGCAACTGTTGCTGTAATGAGCTATAGTGGCTATGACATAGAAGATGCAATTGTCATGAACAA GTCGTCTCTGGATCGTGGTTTTGGTCGCTGTATAGTCATGAAGAAGTATGCTGCTTTTCCATGGCAGTCCTGCATCATGATTCGCCAATATGCTAATAAG ACTTCAGAAAGGATAGTAAAACCACGGAGACTAGATAACAAGGACAAGGAGAGGGTCTTAGATGAAGACGGAATCGCTGCTCCTGGCCAAATAATTAGAA CAGATGATATTTATGTCAACAAGGAGACTCCAGTTGAAACCAGGACTGGATCTGCAGTTGATATGAAATATCGGCCTAGCATGCAAAGATACAAAGGGCC TGCAGGGGAGTCATGTGTGGTTGATCGTGTTGCTCTGTCTACTGGCAAGGATGGCAATTTGTCTATAAAATTAATTATTCGTCAAACTCGTAGGCCAGAG TTGGGTGACAAATTTAGTAGCAGACATGGTCAAAAGGGTGTCTGTGGAACTATCATTCAACAAGAAGATTTTCCTTTCTCTGAACGTGGGATCTGCCCTG ATTTAATTATGAACCCACATGGATTTCCTAGTCGGATGACAGTTGGAAAGATGATAGAGCTTCTTGGAGGTAAAGCTGGAGTTTCTTGTGGTAGATTCCA TTATGGCAGTGCATTTGGAGAACCAAGTGGTCATGCAGACAAGGTTGATGCCATAAGTGAAACTCTCGTCAGGCATGGCTTTAGCTACAATGGCAAGGAT ATGATCTATTCAGGAATAACAGGAAGTCCACTTCAAGCGTATATATTCATGGGACCGATATACTACCAAAAGTTGAAACATATGGTCTTAGATAAAATGC ATGCCAGGGGTTCGGGGCCCCGGGTTATGCTTACTAGACAGCCCACTGAAGGAAGAGCTCGAAACGGAGGATTGCGAGTTGGAGAAATGGAACGTGACTG TCTGATTGCATATGGGGCTAGTATGCTGATTTTTGAGCGCCTGATGGTTTCAAGTGATCCATTTGAAGTTCAGGTTTGCCAAGTCTGTGGTTTGTTAGGA TATTACAGCCACAAGCTGAGAAGTGGGTTTTGTACGACGTGCAAGAACGGAGACAATGTTTCAACAATGAAACTACCCTATGCTTGCAAGCTTTTGATTC AGACTCTCTCTTTAGCTGTTTTTCACGGCGACTTGACGGAATCGGTCCGTTTGATCGCCTCTTCTGCCCAGGGTGTTCGTACTAGTGTGCTTTTAGAGGA TTGTCGACGTTTGCTACAAGTTTCCGTTGCTTTCTTAATTGTGTACGTACCGCGGAAGGATAATAGCGTCGCCCATTTAATGACAAGAAAAGCTCTAAAT TATCCTTCTACAATTTGTCCAAATGAGGCTGCTCACACAGTCACACACAACATGCTCTCCTCCAACATCAAGGGAGTCGCCAATGGCTTCCCACTTGTTA TCCAAGCCCAGAAAGTAATAGAGAAGGAAGCCGATCTCAACCCTGACTTCCTCCGCAACATCTTCCCCAAGATCGAGTGGAGAGCCCTTGTCGACGCCGC CCGCGCCGTCGGATACACGGAGCTTCTGGAGAAGACGGAGGATTCCATGCTGTATTCCGATGATTTCTTGTCGAAGTTCCACCACGCGCTCCTTGAGATC CACCTCAAGGAAGGCTCGTTGTTCTGCCCGGAGACGGACTCTGTCAGTAAAGGCATCCCCTTTATGCTTCTCCACGAAGATGAGGTTTGA
AA sequence Show only first row Show all	>Lus10028778 pacid=23177123 polypeptide=Lus10028778 locus=Lus10028778.g ID=Lus10028778.BGIv1.0 annot-version=v1.0 MGAVEAERSSDGEENTVEQLIDKQKLAAPIKNPVDKFQLVPEFLKVRGLVKQHLDSFNYFVNVGIKKIVRANDRIVSTIDPGIYIRFKDVRIGKPTEIDE ESGIHALTPHSCRLSDRTYSAPLLVDIEYIYGSNDQKQRKEKRDMVIAKMPIMLRSSCCVLYQKDEAELAKLGECPLDPGGYFVVKGTEKVILIQEQLSK NRIIIESDRKGNLIASVTSSTEATKSKTIIMMEKGKMYLCLNQFPVKIPIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSLEECASQQVYTQEKALKF LDFKKDGRALSILRDTFLANVPVHNNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITETVKNIDGTLKKQNRSS RFDPSIVGTNSERGIITNGLERALSTGNWDVKRFKMNRKGVTQVLARLSFIGSLGYLTRISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKN LALMTHVTTDEEDGPLISLAPLTFAYECCGILAVLQKCYCLGVEDLELLTGEELHTPNSYLVIFNGLILGKHRRPQHFAHAMRKLRRACKIGEFVSIFVN EKQRTVYIASDGGRVCRPLVIADEGKSRVKEHHMKELSDGVRTFDDFLREGLIEYLDVNEENNSLIALYEGEATPETTHIEIEPFTILGVIAGLIPYPHH NQSPRNTYQLCRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKYAAFPWQSCIMIRQYANK TSERIVKPRRLDNKDKERVLDEDGIAAPGQIIRTDDIYVNKETPVETRTGSAVDMKYRPSMQRYKGPAGESCVVDRVALSTGKDGNLSIKLIIRQTRRPE LGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADKVDAISETLVRHGFSYNGKD MIYSGITGSPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCQVCGLLG YYSHKLRSGFCTTCKNGDNVSTMKLPYACKLLIQTLSLAVFHGDLTESVRLIASSAQGVRTSVLLEDCRRLLQVSVAFLIVYVPRKDNSVAHLMTRKALN YPSTICPNEAAHTVTHNMLSSNIKGVANGFPLVIQAQKVIEKEADLNPDFLRNIFPKIEWRALVDAARAVGYTELLEKTEDSMLYSDDFLSKFHHALLEI HLKEGSLFCPETDSVSKGIPFMLLHEDEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	0	1
AT4G31520			SDA1 family protein (.1)		Lus10028318 [exp]	2.0	0.8799
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10041229 [exp]	2.0	0.8841
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	2.4	0.8768
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	3.5	0.8678
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	4.7	0.8469
AT3G23900			RNA recognition motif (RRM)-co...		Lus10043159 [exp]	5.9	0.8721
AT2G40430			unknown protein		Lus10037530 [exp]	6.5	0.8641
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	8.9	0.8611
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	9.6	0.8753
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	12.4	0.8370

Compare expression of checked genes

Lus10028778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.