Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52430 165 / 1e-44 hydroxyproline-rich glycoprotein family protein (.1) AT1G63720 141 / 1e-36 unknown protein AT4G25620 125 / 1e-30 hydroxyproline-rich glycoprotein family protein (.1) AT1G76660 109 / 3e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017503 [exp] 1176 / 0 AT5G52430 183 / 5e-51 hydroxyproline-rich glycoprotein family protein (.1) Lus10024642 [exp] 321 / 1e-102 AT5G52430 261 / 2e-82 hydroxyproline-rich glycoprotein family protein (.1) Lus10032276 [exp] 308 / 2e-97 AT5G52430 265 / 8e-84 hydroxyproline-rich glycoprotein family protein (.1) Lus10027498 [exp] 172 / 2e-45 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1) Lus10039253 [exp] 168 / 2e-44 AT5G52430 374 / 6e-125 hydroxyproline-rich glycoprotein family protein (.1) Lus10016050 [exp] 90 / 9e-19 AT1G76660 438 / 5e-152 unknown protein Lus10025171 [exp] 91 / 1e-18 AT1G76660 420 / 1e-141 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G102200 [exp] 251 / 7e-76 AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G129400 [exp] 242 / 2e-72 AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1) Potri.012G144200 [exp] 202 / 4e-57 AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1) Potri.002G001100 [exp] 106 / 3e-24 AT1G76660 487 / 1e-170 unknown protein Potri.005G260000 [exp] 98 / 2e-21 AT1G76660 453 / 7e-158 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028779 pacid=23177281 polypeptide=Lus10028779 locus=Lus10028779.g ID=Lus10028779.BGIv1.0 annot-version=v1.0 ATGAGACGATCAAACAATAGCAATGGAGGAAGAGAAGCGGTGGCTTCTAGAGCTCTTGTTCTCGTCAACAGAAACAACAGTGACAACGCCTTGGTTACTG TTAATGCCGCTGCTAACCGCATAGCCTTCGTCGACCATCGTCTTTCCCAGCCCTCCGCCGCCACCGTCGCTGCTCAGAGGCGCAGGAAACGTATTGGACA TGCAGTATTTGTTGAGTCTCAACCTCCTGGAAGTGGAAATGAAGCTAGTCCAGCTGAAACTAGTAACCAACCTGCTGCAGCTATGCTCCAGTTCATTGCA CCTCCTTCCTCTCCTGCATCTTTCCTTCCATCAGAACCTCCTTCCTGCACACAATCGCCAGCTGGTTTAGTGACTCTGTCTCCCAGTATGTATTCTCCAA GTGGACCTGCCTCCATTTTCGCCATTGGACCTTATGCCCATGAAACTCAGCTGGTTTCTCCACCGGCATTGTCAACTATCACCACTGATCCGTCAACTGC TCCTTTCACTCCTCCGCCAGAGTCTTTTCGTCTTAATACCACAGCCTCCTCGCCCGAGGTGCCTTTTGCCAGGCTACTAGATCCCAGGTTCCAGAATGGT GAAGTTGGTCACAGATTCTCGTCATCACACAATGACTTCCCGCACTATCAGTTTCATCCTGGAAGCCCAGCAGGTCAGGTTATCTCACCTCGATCAGTCA TTTCAGGATCAGGGACGTCATCTCCTTTCCCGGATGGCGAGTTTGCTGCTGTTGGATTCCCCTTTATGGAGTTTCGTGTAGGTACTGATCCTCGGACTCA AGGATCTGGAACTTTGACTCCAGACTCTTCAAGGCTAGCATCAAGCAACTTTGTTCTCGATCGGCAGTCTTCTGATCTAGGTGCACTCCCGAATCTGGAT GGTTGGCGTCAAAACAATCAAGCTGCTAACTGTAGGTTCTTTTTCGAGTTTACTTCTGGTGATCGTTTGACACAGCTTGAGAGGGAGGTGGTCACATTAC CCACCGAGCCTGCCCATGTTTCTGGCAATCTCGAGGAAGCTCCTGCTACTGTGAAGACAGATGGTGAGCAAGAGGTACCAACCCATCGTAGGCACCGGAC CATAACCTTTGGTTGCGTCAATGATTTTGACTTTGAAAATGCAGAGGGGGAAGAGCTTAGTAACCTTGCTCCCGAGGACCGGGAATCACATCAAGGATCC GCTACATTGACTGCAGACTCTGTAAGGCTAGCATCAAGCAATTTTGATGTGGACCGGAAGTCTTCTGATCTTGGTGAACTCCTGTTCCTGGATGGTGGAC ATCAGAACAATCAAGTTGACAACCGTCGGCTCTTTTTCGAGTTAACTGCTGGCAACCATTTGACACAACCTGAAAGGGAAACGTTGAGTGGCACAAGTGA GAAAGCTTCGGATGTCGGGGGAGAGGATGAGGAGCAAGAGATACCAACTCATCGTAGGCATCGGACCATAACCTTTGGATGTGCCGATGACTTCAACTTT GAAGATGAAAAGGTGGAGGAGCTTGATGAGCTTGCTCCTCAGGATCTGACCCCAGACTCTTTAAGCCGAGCAAAATCAAGCATCTTTGTTCTAGACCAGC AGTCCTCTGATCTCGATGAACCGCCACCTCTGAGTGGTGGGCTTCAGAACAGTCAAGCTGCCGATCATCATGTCTTTTTAGAGCCTACTGCTGGAGATCC TCTGAGATATGAAGAGTCAAATCCATCCTCTTCCGGCAAAACTGTGGTTAAACAGATTGAAAACGAGACACAGCCTGAAAGAGGGGTTACTTCACATAGC GAAGTGGCACATGACGTTGAGAATCGTGTTTGTGAGACTTCCAACGGGCTGGTAGAGAAAGATCCCGATGCCGATGCCTGGACGGCGAATGTGGATGAAG ATGGACCAACCCACCGGAGGCATCGAACCATAACGTTTGGGTGTGCCAAAGATTTCGACTTTGAAGATGCAAGGAAGGACAATGACGAGGAGTCGAACGG GAGCATGACCGAGAAGCAAGGCGAGACAGAATGGTCATTCTTTCCAATCATCCAGGCGGTGAGCTAG
AA sequence Show only first row Show all	>Lus10028779 pacid=23177281 polypeptide=Lus10028779 locus=Lus10028779.g ID=Lus10028779.BGIv1.0 annot-version=v1.0 MRRSNNSNGGREAVASRALVLVNRNNSDNALVTVNAAANRIAFVDHRLSQPSAATVAAQRRRKRIGHAVFVESQPPGSGNEASPAETSNQPAAAMLQFIA PPSSPASFLPSEPPSCTQSPAGLVTLSPSMYSPSGPASIFAIGPYAHETQLVSPPALSTITTDPSTAPFTPPPESFRLNTTASSPEVPFARLLDPRFQNG EVGHRFSSSHNDFPHYQFHPGSPAGQVISPRSVISGSGTSSPFPDGEFAAVGFPFMEFRVGTDPRTQGSGTLTPDSSRLASSNFVLDRQSSDLGALPNLD GWRQNNQAANCRFFFEFTSGDRLTQLEREVVTLPTEPAHVSGNLEEAPATVKTDGEQEVPTHRRHRTITFGCVNDFDFENAEGEELSNLAPEDRESHQGS ATLTADSVRLASSNFDVDRKSSDLGELLFLDGGHQNNQVDNRRLFFELTAGNHLTQPERETLSGTSEKASDVGGEDEEQEIPTHRRHRTITFGCADDFNF EDEKVEELDELAPQDLTPDSLSRAKSSIFVLDQQSSDLDEPPPLSGGLQNSQAADHHVFLEPTAGDPLRYEESNPSSSGKTVVKQIENETQPERGVTSHS EVAHDVENRVCETSNGLVEKDPDADAWTANVDEDGPTHRRHRTITFGCAKDFDFEDARKDNDEESNGSMTEKQGETEWSFFPIIQAVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52430			hydroxyproline-rich glycoprote...		Lus10028779 [exp]	0	1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	3.3	0.8773
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10015013 [exp]	8.5	0.7846
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	10.1	0.8285
AT1G67720			Leucine-rich repeat protein ki...		Lus10036935 [exp]	10.7	0.8284
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002213 [exp]	11.7	0.8184
AT1G69160			unknown protein		Lus10036813 [exp]	12.2	0.8012
AT5G22930			Protein of unknown function (D...		Lus10021419 [exp]	14.8	0.7786
AT5G50150			Protein of Unknown Function (D...		Lus10001248 [exp]	20.5	0.7794
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10002579 [exp]	21.6	0.7660
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Lus10035320 [exp]	23.5	0.7928

Compare expression of checked genes

Lus10028779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.