Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41330 486 / 7e-170 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT3G09030 170 / 2e-47 BTB/POZ domain-containing protein (.1) AT4G30940 80 / 5e-16 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT2G24240 67 / 7e-12 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT5G55000 49 / 5e-06 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017502 [exp] 825 / 0 AT5G41330 546 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10032277 [exp] 686 / 0 AT5G41330 574 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10024643 [exp] 685 / 0 AT5G41330 580 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10004834 [exp] 107 / 7e-26 AT3G09030 283 / 4e-93 BTB/POZ domain-containing protein (.1) Lus10002501 [exp] 74 / 5e-14 AT2G38110 330 / 2e-109 glycerol-3-phosphate acyltransferase 6 (.1) Lus10021855 [exp] 74 / 9e-14 AT2G24240 742 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10036274 [exp] 71 / 1e-12 AT2G24240 740 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Lus10038089 [exp] 50 / 1e-06 AT3G09030 144 / 7e-41 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G129300 [exp] 631 / 0 AT5G41330 579 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.001G102300 [exp] 612 / 0 AT5G41330 568 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.016G112900 [exp] 167 / 2e-46 AT3G09030 525 / 0.0 BTB/POZ domain-containing protein (.1) Potri.018G107600 [exp] 75 / 3e-14 AT2G24240 766 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.006G185300 [exp] 72 / 2e-13 AT2G24240 773 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF02214 [flax] [poplar] BTB_2 BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10028780 pacid=23177139 polypeptide=Lus10028780 locus=Lus10028780.g ID=Lus10028780.BGIv1.0 annot-version=v1.0 ATGGTCTCCCGTCGTCCAGACGAGAGCACCAACCTCAATTTCTACAAAACCTTCAACCCTCAAATCTCCGAAATCTTAAAAATCAACGTCGGCGGCCAAA TCTTCCAGACAACTGGTCAGACTCTGTCTCTCGCCGGCCCCAAATCATTCTTCTCCCAGCACCTCACCTCCGCCCATCCTCCTCGTTTCATCGACAGAGA CCCAGAGCTTTTCTCCGTCCTTCTTTCTCTCCTCCGAACCGGAAACCTTCCGTCCAAGGCCAAGCATTTCGACATCGAGGATTTAATTGAAGAATCCAGG TTCTATAACATTGAGCCCCTGTTAATCAATTCCTTAGCTCATCCTTCCCATTTCGATGCCTTCAACCTCGAAAGGTCTATTCTTTTGCCCCTCAACGGTC GAGAGTCTCCTTCCGCCGTATCCACAGCGGCACCGGAGGAAGGAACCTTGCACGTGTCCCACGGCAGCAAAATCACGTCGTTTGATTGGTTGCTACGGAA GAAAGCAACCATCTTAACTCAATTCACAGCGATCGATTCCCTATTATCGATTTCCCCTGCCTTAGCCGCTGCAGGGGCCACTGATTTCTCCGGTCTGCAG ATCCTCGACCTGAAGAAAGGGTTCGTCAAGGAAACTCTAAATTGGGAAAACGTGACGAAATCCGGTTCGACGGTTCAGGCAATCGGGTCGTCTCCTGGCC GCCTTCTATTCTCCAGCTTCGAGTCTAGCCGGAGGAACTCCAATTGCATCATGGTCTACGATCTGAACACCTTCTCGCCGGTTACTCAGATCGGGCATTA CGAGATATTTGGTGCGGAGCTCGATTCTGCAATTCCAGCCACGAAATTGAAATGGATCGATAGCTACAATGTGGTAATGGCATCCGGGTCTCACTCGGGT CCGTCGGGTAGATTAGGGAATGTTAAGCTGTGGGATGTAAGGTCTGGGGAAGCGGTTTGGGAGCTGATGGAGAAAGTTGATTGCTTTGCTGATATAACTG TTTCGGATAGCCTGTCAGGTATCTTTAAAGTTGGGGAGAATTCAGGTGAAGTGTTCTATATGGATTTGAGGAAGTTGGAGGATTCTTCTATTAGCAAGTG GGTTTGTCTTGGTGATGAGAGGAAAATAACTAAGAATTTGAAGAAGGAAGGGGTTGGTTGCAAGATTGAGGCTCATGGGAATCAAGTCTTCTGCAGCAAA GATGGGAACATAGACCTGTGGTCTGAGGTTATGATGGGTGGTCTGGGGACCCGTGATCAAATGTTGCCTGGCCGGGTTTTTCGGAAGAATTTGATGGGGA GAGTGAAGGATATGGGAGGGGCAAAGGTAACTAATTTGGGGTTTGGAGGGAACAAAATGTTTGTGACTCGTAAAGACGAGCAATCTGTTGAAGTGTGGCA GAGTTCTGCTGCCAAGGGATTCTGA
AA sequence Show only first row Show all	>Lus10028780 pacid=23177139 polypeptide=Lus10028780 locus=Lus10028780.g ID=Lus10028780.BGIv1.0 annot-version=v1.0 MVSRRPDESTNLNFYKTFNPQISEILKINVGGQIFQTTGQTLSLAGPKSFFSQHLTSAHPPRFIDRDPELFSVLLSLLRTGNLPSKAKHFDIEDLIEESR FYNIEPLLINSLAHPSHFDAFNLERSILLPLNGRESPSAVSTAAPEEGTLHVSHGSKITSFDWLLRKKATILTQFTAIDSLLSISPALAAAGATDFSGLQ ILDLKKGFVKETLNWENVTKSGSTVQAIGSSPGRLLFSSFESSRRNSNCIMVYDLNTFSPVTQIGHYEIFGAELDSAIPATKLKWIDSYNVVMASGSHSG PSGRLGNVKLWDVRSGEAVWELMEKVDCFADITVSDSLSGIFKVGENSGEVFYMDLRKLEDSSISKWVCLGDERKITKNLKKEGVGCKIEAHGNQVFCSK DGNIDLWSEVMMGGLGTRDQMLPGRVFRKNLMGRVKDMGGAKVTNLGFGGNKMFVTRKDEQSVEVWQSSAAKGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	2.0	0.9674
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	2.4	0.9452
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10042162 [exp]	4.0	0.9130
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	4.2	0.9433
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	6.6	0.9416
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10000494 [exp]	7.0	0.9358
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	8.4	0.9401
AT3G16850			Pectin lyase-like superfamily ...		Lus10037714 [exp]	8.8	0.9199
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10042647 [exp]	9.2	0.9213
AT5G15140			Galactose mutarotase-like supe...		Lus10030673 [exp]	9.9	0.9259

Compare expression of checked genes

Lus10028780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.