Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 644 / 0 ARK3 receptor kinase 3 (.1) AT4G21390 613 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11340 608 / 0 S-locus lectin protein kinase family protein (.1) AT4G27290 604 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 603 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 603 / 0 ARK2 receptor kinase 2 (.1) AT4G11900 601 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 594 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 590 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 572 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039733 [exp] 1426 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039767 [exp] 1146 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 1112 / 0 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018516 [exp] 1098 / 0 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10033743 [exp] 892 / 0 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10025891 [exp] 829 / 0 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 810 / 0 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033741 [exp] 795 / 0 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 635 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G134900 [exp] 738 / 0 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014900 [exp] 734 / 0 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 721 / 0 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119200 [exp] 689 / 0 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 668 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150900 [exp] 667 / 0 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 667 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 664 / 0 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 663 / 0 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 655 / 0 AT4G21380 630 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10028782 pacid=23177204 polypeptide=Lus10028782 locus=Lus10028782.g ID=Lus10028782.BGIv1.0 annot-version=v1.0 ATGGCTGCTCATCTCTGGCTCAACTTTCCTGCTATCATCTTCATTTGCTTATCTCTCAAACCCCATTTCTGTCTTGGAGCTAACAGGATAACTCAAAACC AATCTCTGTCTGGAGACCAGACTTTGGTCTCAGCAGGAAGCAGATTCGAACTGGGTTTCTTCAAGCCAGGTAACTCATCAAACTATTACCTTGGAATCTG GTATTATGGAGTCTCTGACAGAACAGTAGTCTGGGTTGCAAATAGAGAATCTCCCATTTTCGACCATTCCTCTACTGTATTGAGAATCTCCAGCGGTAGT TTAGTCCTGCTGAGCAGGTTCCAGATCCCAATTTGGTCAGCAACTGCTTCTTCCGCTTCATCAGCTTCTGTGGAAGCTGTACTTCTTGACGATGGGAATC TTGTGTTGAGAAGCGCGGATAGAGTTTTGTGGCAGAGCTTTGATTACCCTACTGATACATTTCTTCCCGGTGCCAAGCTTGGGCGCAACAAGATCACGGG CAAGTACACAAATCTGGTTTCGTGGAAGGGCATTGACGATCCTGCACCTGGGAGCTTCTCGCTGCAAATTGACCCGAATGGTACAAACTCGTTTGCAATT ATATGGCAAATGTCTTCCCTGTATTGGACTAGTGGGCCTTGGAATGGCCGTATCTTCAGCTTAGTACCTGAGATGAGGTTGAATTACATCTTCAACTTTT CCTTTGTTGACAATGAGAACGAGACCTATTTCACTTATTCATTGTACAATCAGTCCATCATATCTCGTCTGGTGATGAGTGGTGGTGGTAACATCCAACA ACAAACATGGCTGGAGACTAGTCAACAGTGGATTTTGTTCTGGTCACAGCCCAGAATGCAATGTGACGTCCAAGGCTATTGTGGTGCATTCGGGTCTTGT GATGATCGATCCCTGCCTTACTGCCATTGCCTGGAAGGGTTTGTTCCAAAGTCTACAGATGTTAATGGTGGTTGCGTCAGGAAATCTAATCTTCACTGTG GGAATGTAAGCATTGGGATGAGGAGTACGGATAAGTTCCTCCCGGGGTATGTAGTAAGGGACACAAGGTCGGGTTCTCGAGCCAATGAATCAGCTAGGAA TGCTCAAGAATGTGAATCGATTTGTTTGAATCGCTGCTCCTGTACAGCATATGCTTATCAAGGCAGTAGATGCTCAACTTGGTCTGGAGATGTATTCGAT CTTTATAAACTTGATTATATCCCTGTTGGAGTAGAGATTTATGTAAGAGTTGCTGCTGAAATTCGAAATTCTGGAACTAAGAGAAAGGTTCTTGGTGCTG TGTTTGGCTGTCTAGCTGCGGTTGTTCTTATCGGCTTTGTACTGTTTGCACTATTGAGATACCGTCGGCACAAGCTAGGAAAAGACGTTGAGAAGAGCTA CAATATTGTGAATGGAGATGAAGAAAACAATACGAAGCTGACGTTTCTAAGCATCAAGAGTGTATTAGCTGCAACAGACAATTTCTCTGAAGTCAACAAA CTAGGAGAGGGTGGTTTTGGCCCTGTTTATAAAGGGATCCTGCCTCCAGATGATCAAGAAGTGGCCATAAAAAGGCTGTCGAAGAAATCAGGACAAGGAT TAGAGGAATTCATGAATGAGCTGAAGCTCATAGCAAAACTTCAACACACTTATCTTGTTAGGCTCATAGGCTGCTGTGTTGAAAAGGATGAGAAGATACT GATCTACGAGTACCTGCCAAATCGAAGCTTGGACAAATTCCTCTTTAATTCATATGGGAAAGCTAAGCTGGATTGGGTTACAAGAATTAAGATTATACAA GGGATAGCTCAAGGACTGTTGTACATCCACAAGTACTCAAGACTGAAGGTTATTCACAGGGACATGAAGGCAAGCAATGTACTCCTGGATGCAGAAATGA ATCCCAAAATTTCAGATTTCGGGATGGCCAGGATTTTCGGGATTGGTCAGGCAGAAGCCAACACCAACCGTATAGTTGGAACTTATGGCTACATGTCTCC AGAATATGCATTCTACGGACAGTTCTCTGAAAAATCAGACGTATTCAGCTACGGGGTGCTGCTGTTGGAGATCATTAGCGGGAGGAGAAACACAGATTTC TATGATTCCGAAACTCCCTTCTCCCTTCTTTGCTGGGCATGGGAGCTGTGGAAAGAAGGTAAACCAGAAGATCTACTTGATCCATCAGTGAAGGATACCT GCATTAATGCTGCAGAAGCTGTGAAGGTCGTTCACGTTGGTCTGTTGTGCGTGCAAGAGGATCCAGCTGACAGGCCGACAATGGCTTCCATCGCTCATAT GTTGTCTAGCAACGATTCTCAGTCGTTTCCATTGCCGGGCGAACCGGCCTACATCACAAGGAGAGCTGTTATTGGAAGTAGCGGTGAGCAAGTTCCTGCG GTTTTCTCAAACAACCAATTGACACTGAGCTTGCCCACTGGTAGATAG
AA sequence Show only first row Show all	>Lus10028782 pacid=23177204 polypeptide=Lus10028782 locus=Lus10028782.g ID=Lus10028782.BGIv1.0 annot-version=v1.0 MAAHLWLNFPAIIFICLSLKPHFCLGANRITQNQSLSGDQTLVSAGSRFELGFFKPGNSSNYYLGIWYYGVSDRTVVWVANRESPIFDHSSTVLRISSGS LVLLSRFQIPIWSATASSASSASVEAVLLDDGNLVLRSADRVLWQSFDYPTDTFLPGAKLGRNKITGKYTNLVSWKGIDDPAPGSFSLQIDPNGTNSFAI IWQMSSLYWTSGPWNGRIFSLVPEMRLNYIFNFSFVDNENETYFTYSLYNQSIISRLVMSGGGNIQQQTWLETSQQWILFWSQPRMQCDVQGYCGAFGSC DDRSLPYCHCLEGFVPKSTDVNGGCVRKSNLHCGNVSIGMRSTDKFLPGYVVRDTRSGSRANESARNAQECESICLNRCSCTAYAYQGSRCSTWSGDVFD LYKLDYIPVGVEIYVRVAAEIRNSGTKRKVLGAVFGCLAAVVLIGFVLFALLRYRRHKLGKDVEKSYNIVNGDEENNTKLTFLSIKSVLAATDNFSEVNK LGEGGFGPVYKGILPPDDQEVAIKRLSKKSGQGLEEFMNELKLIAKLQHTYLVRLIGCCVEKDEKILIYEYLPNRSLDKFLFNSYGKAKLDWVTRIKIIQ GIAQGLLYIHKYSRLKVIHRDMKASNVLLDAEMNPKISDFGMARIFGIGQAEANTNRIVGTYGYMSPEYAFYGQFSEKSDVFSYGVLLLEIISGRRNTDF YDSETPFSLLCWAWELWKEGKPEDLLDPSVKDTCINAAEAVKVVHVGLLCVQEDPADRPTMASIAHMLSSNDSQSFPLPGEPAYITRRAVIGSSGEQVPA VFSNNQLTLSLPTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10028782 [exp]	0	1
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10006291 [exp]	1.7	0.9326
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10009718 [exp]	1.7	0.9446
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	2.4	0.9321
AT4G27290			S-locus lectin protein kinase ...		Lus10038554 [exp]	2.8	0.9268
AT2G36630			Sulfite exporter TauE/SafE fam...		Lus10020733 [exp]	6.2	0.9179
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	7.9	0.9418
AT3G22260			Cysteine proteinases superfami...		Lus10003816 [exp]	10.6	0.9325
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	10.6	0.9292
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	11.8	0.9231
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	13.6	0.9322

Compare expression of checked genes

Lus10028782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.