Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34660 528 / 0 SH3 domain-containing protein (.1.2.3) AT4G18060 332 / 2e-112 SH3 domain-containing protein (.1) AT1G31440 228 / 5e-71 SH3 domain-containing protein (.1) AT4G39020 132 / 2e-37 SH3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017501 [exp] 634 / 0 AT4G34660 598 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017500 [exp] 572 / 0 AT4G34660 569 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028784 [exp] 569 / 0 AT4G34660 563 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028785 [exp] 354 / 4e-123 AT4G34660 338 / 2e-117 SH3 domain-containing protein (.1.2.3) Lus10015253 [exp] 348 / 6e-119 AT4G18060 540 / 0.0 SH3 domain-containing protein (.1) Lus10004584 [exp] 345 / 6e-118 AT4G18060 549 / 0.0 SH3 domain-containing protein (.1) Lus10011975 [exp] 342 / 1e-116 AT4G18060 548 / 0.0 SH3 domain-containing protein (.1) Lus10033292 [exp] 277 / 3e-90 AT1G31440 432 / 3e-150 SH3 domain-containing protein (.1) Lus10034755 [exp] 257 / 7e-82 AT1G31440 397 / 1e-135 SH3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123200 [exp] 571 / 0 AT4G34660 566 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.004G161300 [exp] 555 / 0 AT4G34660 515 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.001G354700 [exp] 347 / 3e-118 AT4G18060 538 / 0.0 SH3 domain-containing protein (.1) Potri.011G077500 [exp] 327 / 9e-111 AT4G18060 514 / 0.0 SH3 domain-containing protein (.1) Potri.001G128800 [exp] 306 / 4e-102 AT4G34660 362 / 6e-124 SH3 domain-containing protein (.1.2.3) Potri.003G105200 [exp] 289 / 2e-95 AT4G34660 325 / 1e-109 SH3 domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0145 [flax] [poplar] Golgi-transport PF03114 [flax] [poplar] BAR BAR domain CL0010 [flax] [poplar] SH3 PF00018 [flax] [poplar] SH3_1 SH3 domain
Representative CDS sequence Show only first row Show all	>Lus10028783 pacid=23177115 polypeptide=Lus10028783 locus=Lus10028783.g ID=Lus10028783.BGIv1.0 annot-version=v1.0 ATGGAAGCCATAAGAAAGCAGGCTACAAGGCTTCGAGAGCAGGTTGCCAAGCAACAACAGGCTGTTCTGAAGCAATTTGGTGGCAGTGGATATGGAGGTT CAGACGGTGTCGTTACTGACGAGGGTGAACTTCATCAGCATCAGAGACTTGAGAAGCTCTACATATCGACACGTGCTGGCAAGCACTTCCAAAGGGACAT TGTACGTGGCGTAGAAGGATACATTGTTACCGGATCGAAACAAGTTGAAATAGGAACAAAGTTATCAGAGGATGGTCGGAAATATGGCTCTGAGAACACA TGTACTAGTGGCAATACATTATCAAAGGCTGCACTCAATTACGGTCGTGCTCGTGCTCAGATGGAAAAGGAGCGGGGCAGTCTGTTGAAAGCGTTCGGTA CACAGGTGGCCGAGCCTTTAAGAGCCATGGTTATGGGAGCTCCACTGGAAGATGCCCGACATCTTGCCCAACGTTATGACAGAATGAGACAAGAAGCAGA AGCTCAGGCCATTGAAGTTTCTAAACGCCAAGTGAAAGTGAGGGAGACGTCTGGCCATCCAGAAGCTACCATGAAATTGGAAGCTGCAGAGTCAAAGCTT CAAGATTTGAAAGCGAACATGGATATCCTGGGGAAGGAAGCAAATGCTGCAATGGCAGCTGTTGAAGCTCAACAACAAAGATTAACTCTGCAGCGGCTTA TTGCTATGGTTGAAGCGGAAAGAAATTACCACCAAAGGGTTCTTCAGATACTTGATCAGCTCGAAACTGAGATGATATCAGAACGACAACGAATTGAAGC ACCACCAACGCCAGTTGAGAACAACATGCCCCCACCCCCTGCATATGAAGAAGTCAACGGCGTGTATGCCTCTCAAGCACAAAATGGTGCAACAGACAGT ATGGGATACTTCTTAGGGGAGGTTTTGAATCCTTATAATGCCGAAACCGACGTTGAGCTGTCTTTGTCAGTTGGTGACTATGTTGTGGTCCGCAAGGTGA CGAACAATGGATGGGCAGAAGGTGAATGCAAAGGGAAAGCAGGTTGGTTCCCGTTCGGTTACATCGAGAGAAGAGATCGAGTTCTGGCCAGCAAAATAGC TGAAGTGTTCTAG
AA sequence Show only first row Show all	>Lus10028783 pacid=23177115 polypeptide=Lus10028783 locus=Lus10028783.g ID=Lus10028783.BGIv1.0 annot-version=v1.0 MEAIRKQATRLREQVAKQQQAVLKQFGGSGYGGSDGVVTDEGELHQHQRLEKLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDGRKYGSENT CTSGNTLSKAALNYGRARAQMEKERGSLLKAFGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQVKVRETSGHPEATMKLEAAESKL QDLKANMDILGKEANAAMAAVEAQQQRLTLQRLIAMVEAERNYHQRVLQILDQLETEMISERQRIEAPPTPVENNMPPPPAYEEVNGVYASQAQNGATDS MGYFLGEVLNPYNAETDVELSLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKIAEVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34660			SH3 domain-containing protein ...		Lus10028783 [exp]	0	1
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10014824 [exp]	9.9	0.8470
AT4G15780		ATVAMP724	vesicle-associated membrane pr...		Lus10000504 [exp]	11.7	0.8390
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10013994 [exp]	12.2	0.8623
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10027283 [exp]	13.0	0.8474
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10017199 [exp]	14.2	0.8491
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10003365 [exp]	19.3	0.8549
AT5G63620			GroES-like zinc-binding alcoho...		Lus10029549 [exp]	21.5	0.8375
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Lus10026430 [exp]	28.3	0.8433
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10006698 [exp]	29.2	0.8478
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10033533 [exp]	30.3	0.8489

Compare expression of checked genes

Lus10028783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.