Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34660 498 / 8e-178 SH3 domain-containing protein (.1.2.3) AT4G18060 318 / 6e-107 SH3 domain-containing protein (.1) AT1G31440 214 / 2e-65 SH3 domain-containing protein (.1) AT4G39020 117 / 2e-31 SH3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017500 [exp] 625 / 0 AT4G34660 569 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017501 [exp] 566 / 0 AT4G34660 598 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028783 [exp] 561 / 0 AT4G34660 596 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028785 [exp] 401 / 2e-141 AT4G34660 338 / 2e-117 SH3 domain-containing protein (.1.2.3) Lus10004584 [exp] 323 / 5e-109 AT4G18060 549 / 0.0 SH3 domain-containing protein (.1) Lus10015253 [exp] 320 / 5e-108 AT4G18060 540 / 0.0 SH3 domain-containing protein (.1) Lus10011975 [exp] 320 / 7e-108 AT4G18060 548 / 0.0 SH3 domain-containing protein (.1) Lus10033292 [exp] 253 / 5e-81 AT1G31440 432 / 3e-150 SH3 domain-containing protein (.1) Lus10034755 [exp] 237 / 6e-74 AT1G31440 397 / 1e-135 SH3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123200 [exp] 536 / 0 AT4G34660 566 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.004G161300 [exp] 521 / 0 AT4G34660 515 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.001G354700 [exp] 323 / 5e-109 AT4G18060 538 / 0.0 SH3 domain-containing protein (.1) Potri.011G077500 [exp] 314 / 2e-105 AT4G18060 514 / 0.0 SH3 domain-containing protein (.1) Potri.001G128800 [exp] 286 / 4e-94 AT4G34660 362 / 6e-124 SH3 domain-containing protein (.1.2.3) Potri.003G105200 [exp] 277 / 8e-91 AT4G34660 325 / 1e-109 SH3 domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0145 [flax] [poplar] Golgi-transport PF03114 [flax] [poplar] BAR BAR domain CL0010 [flax] [poplar] SH3 PF00018 [flax] [poplar] SH3_1 SH3 domain
Representative CDS sequence Show only first row Show all	>Lus10028784 pacid=23177230 polypeptide=Lus10028784 locus=Lus10028784.g ID=Lus10028784.BGIv1.0 annot-version=v1.0 ATGGAAGCCATTAGAAAGCAGGCCACACGGTTTCGAGAACAGGTTGCCAAGCAACAACAGGCTGTTCTGAAGCAATTTGGTGGTAGTGGCTATGGAGGTT CGGACGGTGTTGCTACTGATGAGGCTGAACTTCATCAGCATCAGAGACTCGAGAAGCTTTACATATCGACACGAGCTGCCAAGCATTTCCAACGGGATAT TGTTCGTGGAACAGAAGGATATGTCGTTACCGGATCGAAACAAGTTGAAATAGGAACCAAGTTATCAGAGGATAGTCGGAAGTATGGCTCTGGAAACACT TGTACTAGTGGCAATACTTTGTCAAGGGCTGCACTCAGTTATGGACGTGCTCGTGCTCAGATGGAGAAGGAGCGGGGCAATATGTTGAAAGCTCTCGGTG CACAGGTGGCGGAGCCACTAAGAGCAATGGTCATGGGCGCACCACTGGAAGATGCTCGGCATCTTGCTCAACGTTACGACAGGATGAGACAAGATGCAGA AGCTCAGGCCATTGAAGTTTCGAAACGTCAAGCTAAAGCAAAGGAAATGCCAGGCCATCCCGAGGTTACCACGAAATGGGAAGCTGCAGAGTCGAAGCTT CGAGATATGAAAGCTAACATCGACATCCTCGGTAAGGAAGCAGCTTCAGCAATGGCCGCTGTCGAAGCTCAACAGCAGAGACTAACTCTCCAGAGGCTTA TAGCTATGGTTGAAGCAGAAAGAAATTACCACCACAGGGTTCTTCAGATACTAGATCAGCTAGAAACTGAGATGATATCGGAACGACAAAGGATTGAAGC ACCTCCGGCACAAGTTGAGAACGAGATGCCACCGCCACCTCCATATGAAGAAGTAATAAACACTGTTTATGCCTCTGAAACACCAAACGGCTCAACAGAC AATATGGGATACTTTTTGGGGGAGGTTATGAATACTTATAATGCTGAAACTGATGTGGAGCTGTCCTTTTCTGCTGGTGACTATATTGTGGTCCGCAAGG TGACGAACAATGGATGGGCAGAAGGTGAATGCAAAGGGAAAGCAGGTTGGTTCCCGTTCGGATACATTGAACGAAGGGATCAAGTTCTAGCAAGCAAAAT TGCACAAGTGTTTTAG
AA sequence Show only first row Show all	>Lus10028784 pacid=23177230 polypeptide=Lus10028784 locus=Lus10028784.g ID=Lus10028784.BGIv1.0 annot-version=v1.0 MEAIRKQATRFREQVAKQQQAVLKQFGGSGYGGSDGVATDEAELHQHQRLEKLYISTRAAKHFQRDIVRGTEGYVVTGSKQVEIGTKLSEDSRKYGSGNT CTSGNTLSRAALSYGRARAQMEKERGNMLKALGAQVAEPLRAMVMGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKAKEMPGHPEVTTKWEAAESKL RDMKANIDILGKEAASAMAAVEAQQQRLTLQRLIAMVEAERNYHHRVLQILDQLETEMISERQRIEAPPAQVENEMPPPPPYEEVINTVYASETPNGSTD NMGYFLGEVMNTYNAETDVELSFSAGDYIVVRKVTNNGWAEGECKGKAGWFPFGYIERRDQVLASKIAQVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34660			SH3 domain-containing protein ...		Lus10028784 [exp]	0	1
AT5G50175			unknown protein		Lus10019469 [exp]	6.5	0.7616
AT4G17486			PPPDE putative thiol peptidase...		Lus10043293 [exp]	13.7	0.7383
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10028252 [exp]	30.3	0.6344
AT2G39170			unknown protein		Lus10028816 [exp]	33.4	0.7084
AT1G28100			unknown protein		Lus10001800 [exp]	55.2	0.6564
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10012502 [exp]	60.1	0.6521
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10037686 [exp]	62.3	0.6511
AT2G17080			Arabidopsis protein of unknown...		Lus10023952 [exp]	64.8	0.6747
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	82.3	0.6506
					Lus10020961 [exp]	94.4	0.6453

Compare expression of checked genes

Lus10028784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.