Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34660 295 / 2e-100 SH3 domain-containing protein (.1.2.3) AT4G18060 209 / 2e-66 SH3 domain-containing protein (.1) AT4G39020 116 / 1e-32 SH3 domain-containing protein (.1) AT1G31440 103 / 1e-25 SH3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028784 [exp] 401 / 1e-141 AT4G34660 563 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017500 [exp] 388 / 9e-137 AT4G34660 569 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017501 [exp] 348 / 8e-121 AT4G34660 598 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028783 [exp] 345 / 1e-119 AT4G34660 596 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10015253 [exp] 213 / 3e-68 AT4G18060 540 / 0.0 SH3 domain-containing protein (.1) Lus10004584 [exp] 208 / 4e-66 AT4G18060 549 / 0.0 SH3 domain-containing protein (.1) Lus10011975 [exp] 204 / 8e-65 AT4G18060 548 / 0.0 SH3 domain-containing protein (.1) Lus10033292 [exp] 155 / 2e-45 AT1G31440 432 / 3e-150 SH3 domain-containing protein (.1) Lus10034755 [exp] 144 / 2e-40 AT1G31440 397 / 1e-135 SH3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123200 [exp] 324 / 2e-111 AT4G34660 566 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.004G161300 [exp] 315 / 5e-108 AT4G34660 515 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.001G354700 [exp] 208 / 3e-66 AT4G18060 538 / 0.0 SH3 domain-containing protein (.1) Potri.011G077500 [exp] 204 / 1e-64 AT4G18060 514 / 0.0 SH3 domain-containing protein (.1) Potri.001G128800 [exp] 181 / 2e-55 AT4G34660 362 / 6e-124 SH3 domain-containing protein (.1.2.3) Potri.003G105200 [exp] 177 / 5e-54 AT4G34660 325 / 1e-109 SH3 domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [flax] [poplar] SH3 PF00018 [flax] [poplar] SH3_1 SH3 domain
Representative CDS sequence Show only first row Show all	>Lus10028785 pacid=23177117 polypeptide=Lus10028785 locus=Lus10028785.g ID=Lus10028785.BGIv1.0 annot-version=v1.0 ATGGGCGCACCACTGGAAGATGCTCGGCATCTTGCTCAACGTTACGACAGGATGAGACAAGATGCAGAAGCTCAGGCCATTGAAGTTTCGAAACGTCAAG CTAAAGCAAAGGAAATGCCAGGCCATCCCGAGGTTACCACGAAATGGGAAGCTGCAGAGTCGAAGCTTCGAGATATGAAAGCTAACATCGACATCCTCGG TAAGGAAGCAGCTTCAGCAATGGCCGCTGTCGAAGCTCAACAGCAGAGACTAACTCTCCAGAGGCTTATAGCTATGGTTGAGGCAGAAAGAAATTACCAC CAGAGGGTTCTTCAGATACTAGATCAGCTAGAAACTGAGATGATATCGGAACGACAAAGGATTGAAGCACCTCCGGCACAAGTTGAGAACGAGATGCCAC CGCCACCTCCATATGAAGAAGTAATAAACACTGTTTATGCCTCTGAAACACCAAACGGCTCAACAGACAATATGGGATACTTTTTGGGGGAGGTTATGAA TACTTATAATGCTGAAACTGATGTGGAGCTGTCCTTTTCTGCTGGTGACTATATTGTGGTCCGCAAGGTGACGAACAATGGATGGGCAGAAGGTGAATGC AAAGGGAAAGCAGGTTGGTTCCCGTTCGGATACATTGAACGAAGGGATCAAGTTCTAGCAAGCAAAATTGCACAAGTGTTTTAG
AA sequence Show only first row Show all	>Lus10028785 pacid=23177117 polypeptide=Lus10028785 locus=Lus10028785.g ID=Lus10028785.BGIv1.0 annot-version=v1.0 MGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKAKEMPGHPEVTTKWEAAESKLRDMKANIDILGKEAASAMAAVEAQQQRLTLQRLIAMVEAERNYH QRVLQILDQLETEMISERQRIEAPPAQVENEMPPPPPYEEVINTVYASETPNGSTDNMGYFLGEVMNTYNAETDVELSFSAGDYIVVRKVTNNGWAEGEC KGKAGWFPFGYIERRDQVLASKIAQVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34660			SH3 domain-containing protein ...		Lus10028785 [exp]	0	1
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10010853 [exp]	5.3	0.6422
AT4G18425			Protein of unknown function (D...		Lus10015395 [exp]	9.2	0.6576
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10043300 [exp]	10.5	0.6843
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	14.4	0.6609
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10022887 [exp]	18.3	0.6419
AT5G62650			Tic22-like family protein (.1)		Lus10010502 [exp]	23.3	0.6105
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10012016 [exp]	26.7	0.6186
AT2G19130			S-locus lectin protein kinase ...		Lus10012955 [exp]	26.9	0.6813
AT4G15910		ATDI21	drought-induced 21 (.1)		Lus10037497 [exp]	27.6	0.6336
AT1G74350			Intron maturase, type II famil...		Lus10017037 [exp]	28.6	0.6351

Compare expression of checked genes

Lus10028785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.