Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34640 622 / 0 ERG9, SQS1 squalene synthase 1 (.1) AT4G34650 575 / 0 SQS2 squalene synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017499 [exp] 782 / 0 AT4G34640 676 / 0.0 squalene synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161200 [exp] 676 / 0 AT4G34640 659 / 0.0 squalene synthase 1 (.1) Potri.009G123100 [exp] 666 / 0 AT4G34640 639 / 0.0 squalene synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00494 [flax] [poplar] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Lus10028786 pacid=23177336 polypeptide=Lus10028786 locus=Lus10028786.g ID=Lus10028786.BGIv1.0 annot-version=v1.0 ATGGGGAGTTTGGGAGCACTTCTGAAGCACCCAGATGACTTGTACCCGCTTCTGAAGCTGAAATTGGCTGCCAGGAGTGCGGAGAAGCAGATACCACCAC ACCCTCACTGGGGATTCTGTTACACCATGCTTCTTAAGGTCTCTCGCAGCTTCGCTCTTGTCATTCAGCAGCTCGGCACTGAGCTCCGTGACGCTGTATG CATCTTCTACTTGGTCCTTCGAGCCCTTGATACAGTTGAGGATGATACGAGCATAGCAACAGAAGTAAAGGTGCCTATTCTAAACGATTTTCACCGTCAC ATATATGATCAGGAATGGCACTTCTCGTGTGGTACGAAGGACTATAAAGTTCTCATGGACGAGTTCCACCATGTCTCAACTGCTTTCTTAGAGCTGGGGA GAGGCTATCAAGAGGCAATTGAGGATATCACTAAAAGGATGGGCGATGGAATGGCAAAATTTATATTAAAAGAGGTGGAATCCCTTGATGATTATGACGA GTATTGCCACTATGTAGCTGGCCTTGTAGGGCTAGGCCTCTCAAAGCTTTTCCATGCTTCAGGAAAGGAAGATTTAGCACCTGACGATCTCTCCAATTCA ATGGGTTTATTTCTTCAGAAAACGAACATCATTCGAGATTATTTGGAAGATATAAACGAGATACCTAAGTCTCGCATGTTTTGGCCTCGTGAGATCTGGA GTAAATATGTCAGCAAACTTGAGGACTTGAAATATGAAGAAAACTCAGTCAAGGCAGTGCAATGTTTGAATGATATGGTCACTAATGCTTTGATACATAT GGATGACTGTGTGAAGTACTTGTCTGCTCTGAGAGATCCTGCTATATTTCGGTTCTGTGCTATTCCTCAGATAATGGCAATTGGAACCCTGGCAATGTGC TATAACAATATTGAAGTCTTCAGAGGCGTAGTAAAGATGAGGCGCGGTCTTACTGCTAAAGTAATTAACGACACTAAAACCATGGCTGATGTTTATGGTG CTTTCTACGACTTCTCTTGTATGCTGAAGTCTAAGGTTGATAAGAATGATCCCAATGCAACAAAAACACTAAGCAGACTGGAAGCCATTCAAGCGACTTG CAGAGGATCTGGACTCCTCAATAAAAGGAAATCGTACATTTTGGAGGGCAAGAATCAATACAATCGCTTCCTGATTGTCCTGCTTGTCATTATCCTGGCT ATCATATTTTCTCGTCTCAACGGCACTCGCTCAAGTACCTAA
AA sequence Show only first row Show all	>Lus10028786 pacid=23177336 polypeptide=Lus10028786 locus=Lus10028786.g ID=Lus10028786.BGIv1.0 annot-version=v1.0 MGSLGALLKHPDDLYPLLKLKLAARSAEKQIPPHPHWGFCYTMLLKVSRSFALVIQQLGTELRDAVCIFYLVLRALDTVEDDTSIATEVKVPILNDFHRH IYDQEWHFSCGTKDYKVLMDEFHHVSTAFLELGRGYQEAIEDITKRMGDGMAKFILKEVESLDDYDEYCHYVAGLVGLGLSKLFHASGKEDLAPDDLSNS MGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYVSKLEDLKYEENSVKAVQCLNDMVTNALIHMDDCVKYLSALRDPAIFRFCAIPQIMAIGTLAMC YNNIEVFRGVVKMRRGLTAKVINDTKTMADVYGAFYDFSCMLKSKVDKNDPNATKTLSRLEAIQATCRGSGLLNKRKSYILEGKNQYNRFLIVLLVIILA IIFSRLNGTRSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Lus10028786 [exp]	0	1
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	12.5	0.8716
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10007957 [exp]	13.0	0.8230
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10006281 [exp]	25.2	0.8391
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041223 [exp]	28.4	0.8336
AT3G48860			unknown protein		Lus10036015 [exp]	29.3	0.8398
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	40.2	0.8260
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10000900 [exp]	45.6	0.8227
AT2G43590			Chitinase family protein (.1)		Lus10024368 [exp]	47.2	0.8107
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	48.2	0.8325
					Lus10008034 [exp]	52.1	0.7682

Compare expression of checked genes

Lus10028786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.