Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39040 98 / 9e-24 RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT2G21350 97 / 9e-24 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017965 [exp] 122 / 1e-32 AT2G21350 148 / 2e-43 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122500 [exp] 118 / 4e-31 AT2G21350 160 / 2e-48 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10028787 pacid=23177189 polypeptide=Lus10028787 locus=Lus10028787.g ID=Lus10028787.BGIv1.0 annot-version=v1.0 ATGGCGGCGATGGCTTCCTCGGTCTCTGCCTCGTCAGCCGTCACCATCAGCATCCTCCGCCGACTCCTCCGATCGACACTCAGGCATCCGGTTTTTTCCT CCTCCTCATCCCAATCAATTCGGTCATCCGCCGCAGAAGCCAGTCACGCCGATAGCTACTTCAGGCTAAACCCTAGTTCCAGTCGCACAACAACCGCCTC CTCCGGTACTCTTCTCCAATCCCATTCTGCTGTTCTCTTCTTCTCCAAACGTGCTTTCTCTTCACACTCTCGTACAACCGAAGAAGTAGAAGAGGAGGAA GAAGATTTAGTAGAGGAAAGCGGCGAAGGTTTAAGCTGCGAAATCGAGCTTGATTCCGAAGACGAGGAAGGAGGAGAAGGTGAGCGGTTAAGTTCCGAGT TAGTGGAAAATGGAGGCGATGATTCCTGTTCTTCTAATGAAGGGAAAGTGCTGAACTTGACTGTTAGGGAGAAGAAAGAGCTAGCTTCGTACGCTCAGGG ATTGGGGAAGAAGCTCAAGTCCCAATTGGTCGGGAAATCGGGCATCACGGAGAAGGTAGCCGCTTCTTTGATAGCGAATCTTGAAGCCAATGAGCTCATC AAGATTAAAATACACAAAACATGCCCAGATGAGTTAGAGGATGTGGTGCAGCAGCTGGAGGAGCTACCCAGTTCCACTGTGGTTAGTAGAATAGGAAGGA CCATGATCGTTTACAGGCCGAGTATCGCTAAACAGAAGGCTAAAGAGAAGGCGGAGGAAAAGAGGAGGCTGGCACGTGAAGCTCAGGCGAGGATACAACA AGAGAACATAACACAAATCAGACCGCCGTTCCAGGTTGTGCATGAAATAGACGAGAATGCTGCATGGGCGCAGAGGCCACTGTAG
AA sequence Show only first row Show all	>Lus10028787 pacid=23177189 polypeptide=Lus10028787 locus=Lus10028787.g ID=Lus10028787.BGIv1.0 annot-version=v1.0 MAAMASSVSASSAVTISILRRLLRSTLRHPVFSSSSSQSIRSSAAEASHADSYFRLNPSSSRTTTASSGTLLQSHSAVLFFSKRAFSSHSRTTEEVEEEE EDLVEESGEGLSCEIELDSEDEEGGEGERLSSELVENGGDDSCSSNEGKVLNLTVREKKELASYAQGLGKKLKSQLVGKSGITEKVAASLIANLEANELI KIKIHKTCPDELEDVVQQLEELPSSTVVSRIGRTMIVYRPSIAKQKAKEKAEEKRRLAREAQARIQQENITQIRPPFQVVHEIDENAAWAQRPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39040			RNA-binding CRS1 / YhbY (CRM) ...		Lus10028787 [exp]	0	1
AT2G17880			Chaperone DnaJ-domain superfam...		Lus10028453 [exp]	6.6	0.8797
AT1G15670			Galactose oxidase/kelch repeat...		Lus10017300 [exp]	12.0	0.8579
AT3G52105			unknown protein		Lus10029521 [exp]	13.1	0.8224
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030920 [exp]	21.1	0.8690
AT1G27290			unknown protein		Lus10003121 [exp]	21.2	0.8684
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10034316 [exp]	21.2	0.8389
AT4G27450			Aluminium induced protein with...		Lus10018484 [exp]	22.4	0.8571
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	23.1	0.8735
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10042080 [exp]	23.7	0.8232
AT1G68490			unknown protein		Lus10038934 [exp]	27.6	0.8430

Compare expression of checked genes

Lus10028787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.