Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026358 [exp] 181 / 4e-53 ND 42 / 6e-05 Lus10042300 [exp] 134 / 8e-37 ND 35 / 0.008 Lus10007012 [exp] 111 / 3e-28 ND / Lus10007009 [exp] 86 / 1e-18 ND / Lus10042299 [exp] 62 / 2e-11 ND / Lus10006666 [exp] 55 / 1e-08 ND / Lus10017966 [exp] 47 / 1e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114701 [exp] 68 / 4e-13 ND / Potri.009G114800 [exp] 59 / 2e-10 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10950 [flax] [poplar] Organ_specific Organ specific protein
Representative CDS sequence Show only first row Show all	>Lus10028788 pacid=23177225 polypeptide=Lus10028788 locus=Lus10028788.g ID=Lus10028788.BGIv1.0 annot-version=v1.0 ATGATCTATCCCACAAATGCCAGGACATTAGGAATTGCTGCAAGCGAGTCCTACTGGAGAGATGTCATGAAAGGTCAACCTTTGCCGGAATCACTCAAAT CCCTCGTCGTTGCTGAGGTGGCGGTGGCAAACAATGATCGGGAAGGAAAGGGGTGTGAAGCCGAGGAGATTGTGTTGAAGGTCGACGATCTTTCATCTGA CAAATTCAATATTGATATCGAGCCACAACCTCAAGGCCGTGACGTGGTTAGTACTAATAAGTTGATCACAACAAATATTGAGTCACAACCTAAAATTTCA AGTTATGTCGAAAAGATGACTAGGAAATTCGCAAAAGATATTGAGCCGCAACCTCAAGCCACAGATTACCGCGAGGGCGTCAAGCCAACTAAGTTTACAA AAGAGACTAAGTCGCAACTTCAATTTTCGGGTTTTGACGGAAATAGCAAGAAGTTTACCGAAGATATCGAGCCTCAACATCAACTTACGAATTATCGCAA CGACATCCATCCAAATGAGTTTACAAAAAGTATCAAGCCGGAATTTCAAGTCACGGTTCATGGCAATGGCAATAAGTTTACAAATGATATTGGGTCGGAA CCTCAAGTTTCGGATTACCGCAACGTGATCAACCCAAACAAATTCCCAAAGGGTACAATCGAGCCACAACCTCAAATCATAACTTATGGCAACGGTAAAA AATTTACAAACGATATCAAGCCGCACCCTCAAGTTACAGATTACCGCAACCACATCAAACCAAACAAGTTCACAAAGGGTATTGAGCCACAACCTCAAGT TACAGACTACCGCAACGTCGTCGAACCAAACAAGTTCACAAAGAGTATCAAGCCACAACCTCAAGCGACAAGTTATGGCAATATCAAAATCTTCACAACA GATATCGAGCCGCAACCTCAAGTTTCAAATTACCGCAACGAGATCCGTCGGAGCAAGTTGGTGATGGAATCTTGA
AA sequence Show only first row Show all	>Lus10028788 pacid=23177225 polypeptide=Lus10028788 locus=Lus10028788.g ID=Lus10028788.BGIv1.0 annot-version=v1.0 MIYPTNARTLGIAASESYWRDVMKGQPLPESLKSLVVAEVAVANNDREGKGCEAEEIVLKVDDLSSDKFNIDIEPQPQGRDVVSTNKLITTNIESQPKIS SYVEKMTRKFAKDIEPQPQATDYREGVKPTKFTKETKSQLQFSGFDGNSKKFTEDIEPQHQLTNYRNDIHPNEFTKSIKPEFQVTVHGNGNKFTNDIGSE PQVSDYRNVINPNKFPKGTIEPQPQIITYGNGKKFTNDIKPHPQVTDYRNHIKPNKFTKGIEPQPQVTDYRNVVEPNKFTKSIKPQPQATSYGNIKIFTT DIEPQPQVSNYRNEIRRSKLVMES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028788 [exp]	0	1
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	1.4	0.9586
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10013130 [exp]	2.0	0.9475
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10006669 [exp]	2.4	0.9442
					Lus10002344 [exp]	4.0	0.8974
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	4.6	0.9118
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	5.3	0.9291
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	5.9	0.9285
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10012266 [exp]	7.7	0.8623
					Lus10018646 [exp]	8.9	0.8453
					Lus10042813 [exp]	9.8	0.9137

Compare expression of checked genes

Lus10028788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.