Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48830 330 / 2e-113 Ribosomal protein S7e family protein (.1.2) AT3G02560 313 / 4e-107 Ribosomal protein S7e family protein (.1.2) AT5G16130 307 / 1e-104 Ribosomal protein S7e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017497 [exp] 386 / 1e-135 AT1G48830 325 / 3e-115 Ribosomal protein S7e family protein (.1.2) Lus10034909 [exp] 352 / 4e-122 AT1G48830 331 / 1e-117 Ribosomal protein S7e family protein (.1.2) Lus10023638 [exp] 350 / 1e-121 AT1G48830 330 / 4e-117 Ribosomal protein S7e family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115400 [exp] 323 / 9e-111 AT3G02560 315 / 4e-111 Ribosomal protein S7e family protein (.1.2) Potri.004G099200 [exp] 321 / 3e-110 AT3G02560 314 / 6e-111 Ribosomal protein S7e family protein (.1.2) Potri.006G087900 [exp] 320 / 6e-110 AT3G02560 316 / 2e-111 Ribosomal protein S7e family protein (.1.2) Potri.016G100400 [exp] 320 / 9e-110 AT3G02560 313 / 1e-110 Ribosomal protein S7e family protein (.1.2) Potri.015G046100 [exp] 110 / 5e-30 AT1G48830 110 / 1e-32 Ribosomal protein S7e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [flax] [poplar] S24e_L23_L15e PF01251 [flax] [poplar] Ribosomal_S7e Ribosomal protein S7e
Representative CDS sequence Show only first row Show all	>Lus10028789 pacid=23177120 polypeptide=Lus10028789 locus=Lus10028789.g ID=Lus10028789.BGIv1.0 annot-version=v1.0 ATGTACACCGCTAAGCAGAAGATCCACAAGGATAGGGACGTCGAACCTTCCGAATTCGAGGAGTCTGTTGCTCAGGCGTTCTTTGATTTGGAGAATACCA ACCAGGAGCTGAAGAGTGAGTTGAAGGATCTCTACATTAACTCGGCTACCCAGATTGATGTCTCTGGGAGCCGGAAGGCTGTTGTGATCCATGTTCCTTA CAGGCTTAGGAAGGCTTTCCGTAAGGTTCATGCTCGGCTTGTGAGGGAGCTCGAGAAGAAGTTCAGTGGAAAGGACGTCATTGTGATAGCTACAAGGAGG ATGGTGAGGCCACCAAAGAAGGGCTCTGCTGCTCAAAGACCTCGCAGCCGCACACTCACCTCAGTCCACGAAGCAGTGCTTGAGGACATCGTGATGCCAG CTGAGATTGTGGGGAAACGAACTAGGTACCGAGTCGATGGTACCAAGATCATGAAGGTGTTCCTAGACCCAAAGGAGAGGAACACCACGGATTACAAACT AGAGGCCTTCTCGAAAGTTTACAGAAAGCTTACAGGCAAAGATGTCGTATTTGAGTTCCCAGCAACTGAACTGCCAATTCGGGTTTCAATGTTTAACCGT TTTGGTTTTGTGTTGTTTGTTCTGGTAAATGCAGTTCACGGTAAGATGTATACCGCAAAGCAGAAGATCCACAAGGATAAGGATGTTGAGCCTTCAGAGT TTGAGGAGTCTGTTGCTCAGGCGTTCTTTGATTTGGAGAATACCAACCAGGAGCTGAAGAGTGAGCTTAAGGATCTCTATATCAACTCAGCCACCCAGAT TGATGTCTCTGGCAGCAGGAAGGCTGTTGTGATCCATGTTCCTTACAGACTTAGGAAGGCATTCAGGAAGGTCCACACCAGACTAGTGAGGGAGCTTGAG AAGAAGTTCAGTGGAAAGGATGTCATTGTTATTGCTACCCGGAGGATGGTGAGGCCACCAAAGAAGGGCTCAGCAGCTCAAAGACCCCGCAGCAGGACTC TCACTTCGGTCCATGAAGCAGTGCTCGAGGACATTGTGATGCCAGCTGAGATTGTTGGGAAACGTACTAGGTATCGCATTGATGGAACCAAGATCACGAA GGTGTTCCTAGACGCAAAGGAGAAGAACACCACGGAGTACAAACTAGAAGCCTTCTCCAAAGTTTACAGAAAGCTCACTGGCAAGGATGTCGTCTTTGAG TTCCCTGCAACTGAAGTGGCATAA
AA sequence Show only first row Show all	>Lus10028789 pacid=23177120 polypeptide=Lus10028789 locus=Lus10028789.g ID=Lus10028789.BGIv1.0 annot-version=v1.0 MYTAKQKIHKDRDVEPSEFEESVAQAFFDLENTNQELKSELKDLYINSATQIDVSGSRKAVVIHVPYRLRKAFRKVHARLVRELEKKFSGKDVIVIATRR MVRPPKKGSAAQRPRSRTLTSVHEAVLEDIVMPAEIVGKRTRYRVDGTKIMKVFLDPKERNTTDYKLEAFSKVYRKLTGKDVVFEFPATELPIRVSMFNR FGFVLFVLVNAVHGKMYTAKQKIHKDKDVEPSEFEESVAQAFFDLENTNQELKSELKDLYINSATQIDVSGSRKAVVIHVPYRLRKAFRKVHTRLVRELE KKFSGKDVIVIATRRMVRPPKKGSAAQRPRSRTLTSVHEAVLEDIVMPAEIVGKRTRYRIDGTKITKVFLDAKEKNTTEYKLEAFSKVYRKLTGKDVVFE FPATEVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48830			Ribosomal protein S7e family p...		Lus10028789 [exp]	0	1
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10040332 [exp]	1.4	0.9780
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10017648 [exp]	2.4	0.9772
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10021978 [exp]	4.5	0.9558
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10033607 [exp]	4.6	0.9722
AT2G20450			Ribosomal protein L14 (.1)		Lus10011807 [exp]	6.0	0.9628
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	6.3	0.9709
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	8.1	0.9649
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10015123 [exp]	8.8	0.9558
AT5G15750			Alpha-L RNA-binding motif/Ribo...		Lus10001767 [exp]	10.0	0.9341
AT1G09590			Translation protein SH3-like f...		Lus10030607 [exp]	11.2	0.9564

Compare expression of checked genes

Lus10028789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.