Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39050 1082 / 0 Kinesin motor family protein (.1) AT2G21380 981 / 0 Kinesin motor family protein (.1) AT1G21730 441 / 2e-138 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 436 / 8e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 427 / 3e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G10180 255 / 1e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 223 / 7e-61 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G21300 210 / 5e-56 ATP binding microtubule motor family protein (.1.2) AT4G24170 206 / 3e-54 ATP binding microtubule motor family protein (.1) AT4G38950 201 / 5e-53 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017969 [exp] 1333 / 0 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10017496 [exp] 1307 / 0 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10041958 [exp] 981 / 0 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10016236 [exp] 479 / 2e-151 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029307 [exp] 462 / 3e-145 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018145 [exp] 456 / 2e-141 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025688 [exp] 454 / 4e-141 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010441 [exp] 245 / 1e-66 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 243 / 1e-65 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122100 [exp] 1224 / 0 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 1214 / 0 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.016G060400 [exp] 546 / 4e-177 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G194900 [exp] 519 / 9e-167 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 475 / 1e-148 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G040700 [exp] 246 / 1e-66 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 222 / 6e-60 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G027600 [exp] 215 / 2e-57 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.007G014800 [exp] 204 / 1e-53 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.005G116900 [exp] 202 / 8e-53 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10028790 pacid=23177287 polypeptide=Lus10028790 locus=Lus10028790.g ID=Lus10028790.BGIv1.0 annot-version=v1.0 ATGGCTCCTAGCCGGTCGCAGTCGGATTCAGTTTACTTAGGCGGTAGCTCGCGCGGTGGTTATGGAAATCGTACGCCGGTTGGTTACGAGGAGCTGATTG CGGAGCCGGTTGAAGCTCCGAGGAGTGGTGAGAGTATATCGGTGACGATTCGGTTTCGACCGTTGAGCGAGAGGGAGTTTCAGAGAGGAGATGAAATTGC ATGGTACGCCGACGGAGATAAGATCGTTAGGAATGAGTATAATCCAGCTACGGCTTATGCATTCGATGCTAATTTTGAGTTGCGTCGAGCAGATAAAGTA TTTGGACCGCACACAATTACTCAAGACGTGTATGATATTGCTGCCAAGCCAGTGGTCAAGTCTGCAATGGAGGGAATTAATGGAACGGTGTTTGCCTATG GTGTCACAAGTAGTGGAAAGACATTCACTATGCATGGAGATCAAAGTGCTCCTGGTATTATACCTTTGGCTATAAAGGATGTTTTCAGCATGATCCAAGA CCTCTTCTGGCTGCTGGTATCTGTTGCATATGAGGCAGTGAATTCTGATCCAATAACTGCTAGCGCCTGTACAAAGATAACAGGTCTGAGATATTGGTTG GCTTGTGGCAATTCAACTGTGGAGATGTATGTGAAACTAGTAATTTTGCTTGATGATCTTGTAGTGGTTCTCCTTCTGATTTCTGTTTTAGGAAACATCA CTGGTTGGTCAGGGATGTATAATTCATTTCAATGTTTGTTTCAGACTCCTGGGAGAGAGTTTCTGCTGCGGGTTTCATATCTGGAAATTTACAATGAGGT TATCAATGATTTACTTGATCCAACTGGACAGAATTTGCGAGTTAGAGAAGATGCACAGGGTACTTACGTCGAGGGTATAAAGGAAGAAGTTGTTTTGTCT CCAGGACATGCATTGTCTTTTATTGCTGCGGGAGAAGAACATCGCCACGTTGGTTCAAATAATTTCAATTTGTTCAGTAGCCGAAGTCACACCATATTCA CACTGATGATTGAAAGCAGTGCTCATGGTGACGAGTATGACGGCGTGGTTTTCTCTCAACTCAACTTGATTGATCTTGCCGGATCTGAGAGCTCAAAAAC TGAAACAACTGGATTGAGGAGAAAAGAAGGATCTTACATCAACAAGAGTCTTCTTACTCTTGGCACTGTAATAGGAAAGCTGAGTGAAGGTAGGGCTTCA CATGTTCCATATCGAGATTCCAAGCTCACCCGTCTTTTGCAATCCTCGTTAAGTGGCCACGGACATGTTTCGCTTATTTGTACAGTTACCCCTGCATCTA GTAATTTGGAGGAAACTCATAATACATTAAAGTTCGCTAGCAGGGCGAAGCGTGTGGAGATCTATGCCTCAAGGAACAAGATCATTGATGAAAAGTCTCT AATTAAGAAGTATCAGAGAGAAATCTCAACTCTTAAAGAGGAACTTGATCAGTTAAGAAGTGGGATGCTCGTTGGTGTGAGCCATGAGGAGATTCTGACC TTAAAACAAAAGGTCATGATTACATTACAGCTAGAAGAAGGACAAGTGAAGATGCAGTCCAGACTGGAAGAAGAGGAGGAAGCAAAGGCTGCTCTCATGA GTAGAATCCAGAGGTTAACCAAGCTAATTCTCGTCTCTACAAAGAATTCAATCCCTGGATTGGGTGATGTTTCTGCTCATCAGCGAAGTCTCTCACATGA TAAACTGGATATCCTGCGAGATGGCACTTTACTTTTGGACAACGAGCATAAAGATTCCCCATCTACTACTGCAATTTCATCAGATCTATCTCATGAATCC AGGCATAACAGATCCTCCAGCAAGTGGAATGAAGAATTTTCACCTGCCTGCAGCACGGTTACTGATTCTGCTGGTGAATATATCAATTCTTCAAAGTTGG CAACAAGTGGACTCTCTCAAGATCAGATGGATCTTCTAGTGGAGCAGGTCAAGATGCTTGCTGAAGAGATTGCATTCAGCTCAAGTTCCCTGAAGCGTCT AGTCGAGCAATCTGTCAATGATCCCGATAGCTCGAAAACTCAGATCCAGAACTTGGAACGTGACATTGAGGAAAAGAGAAAGCAAATGAGAGCTCTAGAA CAACACATTATTGAAAGCGGTGAGGCTTCAATTGCCAATGGATCATTAGCTGATATGCAGCAGAAAGTCATGCGATTGATGACTCAGTGTAATGAAAAAG CTTTTGAGCTTGAGATAAAATCAGCTGACAACCGCATACTCCAGGAGCAATTGCAGAAAAAGTGTTTGGAGAACAAGGAGTTAGAAGATAAGGTGAATCT TCTTGAGCTTCGTTTGGCCTCACCATCAGGCGACAAGTCATCGTTAACATCTGAGCAACCCATCCCTGAAGAATATGTTGATGAACTGAGGAAGAAAATT CAATCACAGGAGATTGCAAATGAAAAGCTGAAGATACAACAGGTTCAGCTTTCAGAGGAGAACAGTGGGCTACACGTACAGAAACAGAAACTAGCTGAAG AAGCTTCTTACGCGAAGGAACTGGCATCTGCTGCAGCAGTCGAGCTAAAAAATCTAGCTGGTGAAATTACTAAGCTATCCTTGCACAACTCGAAATTAGA AAAAGAACTGCTAGCTGCTCGCGAGTCTCTGCAGTATAGAGGTTCCGTTCCACAAAATGGTAGCAACCGTAGATATAACGATGGATCGAGATCAGGGAGG AAAGGGCGATTATCTGGCCGGGTAAACGAGATGGCGCTACACCCAGACGAGTTCGATGCATGGGATCTTGATCCCAATGACATGAAGATGGAATTGCAGG CAAGGAAACAGCGAGAGGCAGCCCTCGAGGCTGCCTTGGCCGAGAGGGAACTCATAGAAGATGAGTACAGGAAAAAAGCAGAAGAAGCAAAGCGTAGGGA AGAGTCTCTTGAAAATGACTTGGCAAACATGTGGGTACTTGTTGCTAAGTTGAAGAAGGAAGGAGGAAATATCCCCGAGTTTATCACCGATGAGAGGCCG AATGACGTTAGATCTAACCACACGAATGAGCCAGAATCGAATGGGTCTGATCATGAAATTGCGTCTAAAGAAAGACAAGTTACTGATTGTCCAAAGCCTG CAGTTGAAGTTCCAAAGGAAGAGCCGTTGGTTGTTCGTTTGAAGGCACGGATGCAAGAGATGAAGGAAAAGGAACTGAAACACTCAGGAAATGGAGATGC CAATTCGCACATCTGTAAAGTATGTTTCGAATCAGCAACCGCAGCCATTCTTCTTCCATGCCGACATTTTTGCTTGTGTAAATCGTGTTCTCTTGCTTGT ACCGAGTGCCCTATCTGCCGAACCAAGATAGCAGATAGGCTTTTCGCATTCACTTCGTGA
AA sequence Show only first row Show all	>Lus10028790 pacid=23177287 polypeptide=Lus10028790 locus=Lus10028790.g ID=Lus10028790.BGIv1.0 annot-version=v1.0 MAPSRSQSDSVYLGGSSRGGYGNRTPVGYEELIAEPVEAPRSGESISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDANFELRRADKV FGPHTITQDVYDIAAKPVVKSAMEGINGTVFAYGVTSSGKTFTMHGDQSAPGIIPLAIKDVFSMIQDLFWLLVSVAYEAVNSDPITASACTKITGLRYWL ACGNSTVEMYVKLVILLDDLVVVLLLISVLGNITGWSGMYNSFQCLFQTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLS PGHALSFIAAGEEHRHVGSNNFNLFSSRSHTIFTLMIESSAHGDEYDGVVFSQLNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGRAS HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSNLEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISTLKEELDQLRSGMLVGVSHEEILT LKQKVMITLQLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNSIPGLGDVSAHQRSLSHDKLDILRDGTLLLDNEHKDSPSTTAISSDLSHES RHNRSSSKWNEEFSPACSTVTDSAGEYINSSKLATSGLSQDQMDLLVEQVKMLAEEIAFSSSSLKRLVEQSVNDPDSSKTQIQNLERDIEEKRKQMRALE QHIIESGEASIANGSLADMQQKVMRLMTQCNEKAFELEIKSADNRILQEQLQKKCLENKELEDKVNLLELRLASPSGDKSSLTSEQPIPEEYVDELRKKI QSQEIANEKLKIQQVQLSEENSGLHVQKQKLAEEASYAKELASAAAVELKNLAGEITKLSLHNSKLEKELLAARESLQYRGSVPQNGSNRRYNDGSRSGR KGRLSGRVNEMALHPDEFDAWDLDPNDMKMELQARKQREAALEAALAERELIEDEYRKKAEEAKRREESLENDLANMWVLVAKLKKEGGNIPEFITDERP NDVRSNHTNEPESNGSDHEIASKERQVTDCPKPAVEVPKEEPLVVRLKARMQEMKEKELKHSGNGDANSHICKVCFESATAAILLPCRHFCLCKSCSLAC TECPICRTKIADRLFAFTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	0	1
AT3G58640			Mitogen activated protein kina...		Lus10029833 [exp]	1.4	0.8961
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10018731 [exp]	1.7	0.8997
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	2.8	0.8617
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	6.7	0.8679
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10000803 [exp]	7.1	0.8305
AT5G62550			unknown protein		Lus10024245 [exp]	7.1	0.8405
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	8.5	0.8324
AT5G58160			actin binding (.1)		Lus10024450 [exp]	8.8	0.8231
AT4G39050			Kinesin motor family protein (...		Lus10017496 [exp]	10.6	0.8343
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10013009 [exp]	13.2	0.7919

Compare expression of checked genes

Lus10028790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.