Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21385 351 / 1e-120 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017494 [exp] 588 / 0 AT2G21385 389 / 3e-135 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G160800 [exp] 384 / 1e-133 AT2G21385 459 / 1e-163 unknown protein Potri.009G121902 [exp] 112 / 2e-30 AT2G21385 130 / 6e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028792 pacid=23177229 polypeptide=Lus10028792 locus=Lus10028792.g ID=Lus10028792.BGIv1.0 annot-version=v1.0 ATGGCTGTTCCTCCTCCTACGCTAGTTTCCGGCGCCGCCGCAACGTTGCTACAGTCACCGCCTCTTCTCTCATGTTCCTGTTATTCCGGTCATCATTTCT TGGCATCTAGCTCCATGAGAACGATCCAAACATGGAGAATTAAGGCTTTCACTGTGCCGAGAATGAAGTTCGTTTTCCCCACCACCACGCCAGTACAATC TAAGAGAAGGAGAACTTTGATATGTGCAGTCGATCAAAATGCAGAAGCAGAATTCAAAAAGACAGTTGGACTGGATTTTCTGATAGAAACACTGAGGGTA GCAAATCCAGCAGAACTTCCCAAGATTGTTGCTGATAACATCCTTGCTTTCGATACGGGTTTCTGGATTCGACTTGCTGCAAGAGCAGATACATGCAAAT CAGAAGATGATAAAGCACGACCTCCGACTTGGTTAATTATCCTGTTTCATGGCATTTCAGAGTGTGACATCATTTGTAAAAAAGAAACGATCGATTCATC TACAGATGTTCTCAAGGATATATTGAAACCAGTGGTTGATCCAGAGGAAGAGGTAACATGGCCACCAAAAGACCCCCAAGCCCTTGAGCTTATGAAGAAA GTGGTAATCCAAAGAGAGCAAGAGGGAGAACTAAATGAAGGGTTCCTTTCTGAAGTCAATGCACAGCTCAGAAATGCCGAAGAAGATGCCGAAAAGCCAG GGCTCGTGGTTATGCTGCAAAAGGTCCTACAATACTATGCATCTGCATCTCTTTCCAGACGTAGCTATGCCAAGAAAGGAAACAAGATTTTGAAGGACGA GCAGTTCCTTGAGACCATAATCAAAGCTCCCGAGGAAGAGTGGAACAGGCTGTTAATCGATGGATTGACGGTTGCGAAAGGTGAAATCACACCCGAGGAA CTCTATGCGGTCATCAAGAAACGAGTTGAACGGGTGATGATTCGAACGGAAGGAGGGTCGTACCAGCAGCGGATTCTGGGCGAGTATCTAAAGAACATCC AATCTCGAGCTGAGGAGATTGTCAAAGTTCTTCAAGGTCAGACGTAA
AA sequence Show only first row Show all	>Lus10028792 pacid=23177229 polypeptide=Lus10028792 locus=Lus10028792.g ID=Lus10028792.BGIv1.0 annot-version=v1.0 MAVPPPTLVSGAAATLLQSPPLLSCSCYSGHHFLASSSMRTIQTWRIKAFTVPRMKFVFPTTTPVQSKRRRTLICAVDQNAEAEFKKTVGLDFLIETLRV ANPAELPKIVADNILAFDTGFWIRLAARADTCKSEDDKARPPTWLIILFHGISECDIICKKETIDSSTDVLKDILKPVVDPEEEVTWPPKDPQALELMKK VVIQREQEGELNEGFLSEVNAQLRNAEEDAEKPGLVVMLQKVLQYYASASLSRRSYAKKGNKILKDEQFLETIIKAPEEEWNRLLIDGLTVAKGEITPEE LYAVIKKRVERVMIRTEGGSYQQRILGEYLKNIQSRAEEIVKVLQGQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21385			unknown protein		Lus10028792 [exp]	0	1
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10022255 [exp]	3.3	0.9486
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10041346 [exp]	9.4	0.9469
AT5G22340			unknown protein		Lus10043400 [exp]	10.8	0.9437
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Lus10001378 [exp]	11.2	0.9122
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10035543 [exp]	12.1	0.9385
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	14.6	0.9419
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003577 [exp]	16.3	0.9314
AT5G16810			Protein kinase superfamily pro...		Lus10040743 [exp]	16.7	0.9351
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	17.9	0.9401
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10005719 [exp]	20.3	0.9386

Compare expression of checked genes

Lus10028792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.