Plant FIBer expression Database

Lus10028793 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017493
[exp]
219 / 7e-73 AT4G34630 46 / 4e-06 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G160700
[exp]
59 / 8e-11 AT4G34630 73 / 3e-16 unknown protein
Potri.009G121700
[exp]
56 / 9e-10 AT4G34630 74 / 1e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10028793 pacid=23177313 polypeptide=Lus10028793 locus=Lus10028793.g ID=Lus10028793.BGIv1.0 annot-version=v1.0
ATGGCCAAATCCTTCGCCTTCCTCCAGTCCGTCTTCTCCTCTTCGTCAGCCGCCGTCACCGCAGGTGAAGAACCGACGATCCTCGTCCAAGATGCGGTCC
ACGGACAAAGTGCTGACTTGTCGTCGTACTGGGAGTTCATCAACGCTTCCGACGCCGATTCCTCCGACACCGAGTCGGTTCTCAGCGTCGAGAACGGATT
CGTATCTCTGCCGGCCTTGTCTGAGGCTTTCTTGCTGACAACAGCCGTGGAGGAAGCGGTCCACGACGACGTCAAAGACGAAGATGTTAAAGAATCTCGA
GACGGATCAGAGAAAGAGGAGGCAGTGGTCGTCGACGTCGCGGATCGTGCCGTCTTCCATCGGCAGATCGTGGTGAGTGACTATACTTCGTACGCTGATC
ATTACAGCGGATTGTACGGGAAGAAGAGACAGGAATATGAAGATGATCTGGAAGAGGAGGAAGATGAGGAGGTGGACGAGTACGGACGAGAAGACGAGCT
GGTTCACGGGAGGCTTGACAGTCGAAGGATGAGGAAACTGGGGAAGAGAGCCTGTGCGAAGATGAGCAACTCCAAGCGCGATCCGTATCGCTACGTCAAG
CGTGGATGCCTCTACGGGAAGCACAAGGCATAA
AA sequence
>Lus10028793 pacid=23177313 polypeptide=Lus10028793 locus=Lus10028793.g ID=Lus10028793.BGIv1.0 annot-version=v1.0
MAKSFAFLQSVFSSSSAAVTAGEEPTILVQDAVHGQSADLSSYWEFINASDADSSDTESVLSVENGFVSLPALSEAFLLTTAVEEAVHDDVKDEDVKESR
DGSEKEEAVVVDVADRAVFHRQIVVSDYTSYADHYSGLYGKKRQEYEDDLEEEEDEEVDEYGREDELVHGRLDSRRMRKLGKRACAKMSNSKRDPYRYVK
RGCLYGKHKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G34630 unknown protein Lus10028793
[exp]
0 1
AT2G25720 unknown protein Lus10032479
[exp]
1.4 0.8242
AT5G54680 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic ... Lus10043076
[exp]
2.0 0.8300
AT2G34585 unknown protein Lus10023307
[exp]
4.2 0.8052
AT2G18050 HIS1-3 histone H1-3 (.1.2) Lus10025968
[exp]
4.6 0.8200
AT5G55160 ATSUMO2, SUMO2,... small ubiquitin-like modifier ... Lus10032561
[exp]
4.9 0.8165
AT2G25720 unknown protein Lus10042976
[exp]
5.1 0.8001
AT5G65520 Tetratricopeptide repeat (TPR)... Lus10035948
[exp]
5.5 0.7973
AT2G15980 Tetratricopeptide repeat (TPR)... Lus10020712
[exp]
5.7 0.8029
AT2G01150 RHA2B RING-H2 finger protein 2B (.1) Lus10007936
[exp]
6.3 0.8049
AT5G60460 Preprotein translocase Sec, Se... Lus10036119
[exp]
6.9 0.7966

Lus10028793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.