Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66350 97 / 4e-24 SHI SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) AT2G21400 87 / 2e-21 SRS3 SHI-related sequence3 (.1) AT3G51060 87 / 4e-20 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) AT1G19790 83 / 8e-19 SRS7 SHI-related sequence 7 (.1.2) AT1G75520 80 / 9e-18 SRS5 SHI-related sequence 5 (.1) AT4G36260 76 / 3e-16 SRS2, STY2 STYLISH 2, SHI RELATED SEQUENCE 2, Lateral root primordium (LRP) protein-related (.1) AT2G18120 72 / 3e-15 SRS4 SHI-related sequence 4 (.1) AT5G12330 68 / 2e-13 LRP1 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) AT3G54430 42 / 7e-05 SRS6 SHI-related sequence 6 (.1) AT5G33210 39 / 0.0003 SRS8 SHI-related sequence 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017492 [exp] 221 / 6e-74 AT2G21400 120 / 1e-34 SHI-related sequence3 (.1) Lus10028352 [exp] 83 / 1e-18 AT3G51060 243 / 4e-78 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Lus10036032 [exp] 72 / 5e-15 AT5G12330 214 / 2e-68 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Lus10003416 [exp] 68 / 2e-13 AT1G75520 258 / 6e-84 SHI-related sequence 5 (.1) Lus10024305 [exp] 67 / 4e-13 AT1G75520 260 / 8e-85 SHI-related sequence 5 (.1) Lus10041803 [exp] 44 / 5e-06 AT3G51060 88 / 1e-21 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Lus10041802 [exp] 45 / 1e-05 AT5G66350 150 / 4e-44 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10009697 [exp] 43 / 3e-05 AT5G66350 103 / 5e-27 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121600 [exp] 100 / 3e-26 AT5G66350 181 / 3e-56 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.004G160600 [exp] 97 / 7e-25 AT5G66350 170 / 4e-52 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.005G118200 [exp] 85 / 2e-19 AT3G51060 233 / 6e-74 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.007G017500 [exp] 81 / 5e-18 AT3G51060 238 / 6e-76 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.002G028500 [exp] 79 / 2e-17 AT1G75520 261 / 1e-85 SHI-related sequence 5 (.1) Potri.009G070800 [exp] 69 / 1e-13 AT5G12330 231 / 9e-74 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.005G234200 [exp] 67 / 5e-13 AT1G75520 222 / 2e-70 SHI-related sequence 5 (.1) Potri.001G276200 [exp] 62 / 3e-11 AT5G12330 226 / 2e-71 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.003G196100 [exp] 56 / 1e-09 AT5G12330 159 / 8e-47 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.001G027700 [exp] 52 / 4e-08 AT5G12330 157 / 4e-46 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [flax] [poplar] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Lus10028794 pacid=23177165 polypeptide=Lus10028794 locus=Lus10028794.g ID=Lus10028794.BGIv1.0 annot-version=v1.0 ATGATGAACGGCGGAGGAGGAGAGACGTCGGCGGGGAGTCTGAGAGGAGGAGGGGCGGTGGCGGGGAGGAGGTGTGAAGACTGTGGGAATCAGGCAAAGA GGGAGTGTAGATATTGGAGGTGCAGGAGATGCTGCAGAAGGAGAAAGTTGGAGTGCCAAACCCACGTTTCCAGCACTTGGGTTCCCACTTCCTTAAGGCG CCTACAGCAAGCTGCTGCTAGGGGAAGTTCAACTACTCATCCTTCCACCTCCCACCAACAACACCATGTTCTTCTTCACCACCATCACCATATTCCCTCA GATCTGGAAAGTGAGAACTTCCCTGGGGAAGTGACTTCGATGGCTACGTTCCATTGCTGCAAAGTGAGGTCGTTGAGGTTGGATGGTGGAAGAAACCATG GAGATGACGATAGGCTAGTTTTCGACGAGTACGCATATCGAACGAGTGTGAGCATCGGAGGCCATCTCTTCAACGGAATCTTGTACGATCAAGGTCCCCA AAGTGAACGACGACAAAGCTCCGCCACGGCTGGAGTAGTTCTAGCTCCGCTTCCTCCTTTAGTTCCGTGCACTTTCCCTCTTCCTACTCTTCATACTCAA TAA
AA sequence Show only first row Show all	>Lus10028794 pacid=23177165 polypeptide=Lus10028794 locus=Lus10028794.g ID=Lus10028794.BGIv1.0 annot-version=v1.0 MMNGGGGETSAGSLRGGGAVAGRRCEDCGNQAKRECRYWRCRRCCRRRKLECQTHVSSTWVPTSLRRLQQAAARGSSTTHPSTSHQQHHVLLHHHHHIPS DLESENFPGEVTSMATFHCCKVRSLRLDGGRNHGDDDRLVFDEYAYRTSVSIGGHLFNGILYDQGPQSERRQSSATAGVVLAPLPPLVPCTFPLPTLHTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10028794 [exp]	0	1
					Lus10031988 [exp]	2.4	0.7184
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	7.7	0.7221
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	12.7	0.7063
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038525 [exp]	13.2	0.6967
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	16.5	0.6974
AT5G05390		LAC12	laccase 12 (.1)		Lus10040957 [exp]	20.8	0.6652
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	23.4	0.6784
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	23.8	0.6922
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	24.1	0.6933
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	24.7	0.6784

Compare expression of checked genes

Lus10028794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.