Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16440 1224 / 0 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G44635 380 / 4e-119 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT4G02060 352 / 1e-109 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G07690 346 / 2e-107 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT1G44900 346 / 3e-105 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G46280 326 / 3e-99 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT3G09660 288 / 3e-85 MCM8 minichromosome maintenance 8 (.1) AT2G14050 239 / 1e-68 MCM9 minichromosome maintenance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017491 [exp] 1593 / 0 AT2G16440 1225 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10036244 [exp] 367 / 5e-114 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10038384 [exp] 367 / 6e-114 AT5G44635 1257 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10001452 [exp] 352 / 1e-109 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10002427 [exp] 352 / 2e-109 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10009052 [exp] 342 / 1e-100 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10015267 [exp] 337 / 6e-100 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10025389 [exp] 321 / 4e-97 AT5G46280 1096 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10009683 [exp] 309 / 5e-89 AT1G44900 963 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121500 [exp] 1330 / 0 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.001G074000 [exp] 380 / 4e-119 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.014G121000 [exp] 352 / 7e-110 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.004G131600 [exp] 337 / 1e-103 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.001G070500 [exp] 341 / 3e-103 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G188700 [exp] 328 / 1e-100 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.018G112800 [exp] 325 / 3e-99 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G131900 [exp] 312 / 4e-94 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.019G014403 [exp] 249 / 1e-71 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.003G157001 [exp] 80 / 3e-18 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10028795 pacid=23177301 polypeptide=Lus10028795 locus=Lus10028795.g ID=Lus10028795.BGIv1.0 annot-version=v1.0 ATGGCTTCCGACACAACTCCGACTCGCTTCAACAACACACCTTCTTCTCCGGATGACTCATTCTCGAGTCCAATCGGAGACACGGTTTCCTCTCCGGCAG CTGGAGGATCTCGCCGGAGCAGACGAGGGAGAGGAGGCAGATCCGCCGGATACGACACTCCTCCTAACCATAACAACTCGCGCTTCGCCAATTCAGAGTC GACTCCAACTCCGCACCATAGCGGGTCGACCTTCCGCCGGGGACGTCCGGCGACGCCTTCATCCACTTCGGAGGGTGCGCCGTCGTCTGAGGCCGGGGAG GACATGGACGAGGCGGCAGCTCCGACTTTTGTTTGGGGAACGAATATCAGCGTGCAGGATGTGAAGAGCGCGATTCAGATGTTTCTGAAGAATTTTAGGG ATGAAAGAAGTAGTCGAGGGACTGAGATTTACGAAGAAGGCAAGTACATGAAGGCGATCCACAGGGTGTTGGAGATTGAAGGGGAGTGGTTGGATGTTGA TGCACACGATGTGTTTGATTATAATACTGATCTGCATGGGAAGATGGTCAGGTATCCGCTTGAGGTTCTGGCTATTTTCGATATTGTACTGATGGATATG GTGAGTCTAACCAACCCGCTATTTGAAAAGCATGTCCAAGTTCGGATATTCAATCTGAAGAGCTCGACTAGTATGAGAAATCTCAACCCTTCAGATATTG AGAAGATGGTCTCACTGAAGGGGATGATAATTCGGGCTAGTTCTATCATACCGGAGATCAGAGAGGCAATATTTAGATGCCTTGTGTGCGGATACTTCTC TGACCCTATTGTTGTAGACCGAGGTCGGATCAGTGAACCTACCTCGTGCCTGAAGCAAGAATGTCAGGCAAAGAATGCTATGACATTAGTACACAACCGC TGCAGGTTTGCTGATAAGCAGATTGTGAGACTTCAGGAGACACCAGATGAGATCCCTGATGGTGGAACACCACATACGGTCAGTCTTTTGATGCACGACA AGCTGGTCGATGCTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGAATTTATAGGGCTATGAGCGTCAGGGTTGGACCCACTCAACGAACTGTGAAGTC ACTATTCAAGGCATGGTTTAATCTTTCTGTGACTTACATTGACTGCCTTCATATCAAGAAAACTGACAAGTCAAGAATGGATGCCATGGAAACTGATAAT GGCCCTGAAAAATGCGATGAAGATGTTGAATTTGATGAAGAAAAGATAAAGCAATTGAGAGAGCTTTCAAAGCTGCCTGATATATACGACAGATTAACAA GGTCTTTGGCACCAAACATTTGGGAGCTAGATGATGTGAAAAGGGGCCTTCTTTGTCAGCTCTTTGGTGGGAATGCCTTGCAATTACCATCTGGTGCGAG CTTCCGTGGTGATATCAACATCCTATTGGTTGGTGATCCTGGTACAAGCAAGTCTCAGCTGCTCCAGTACATACACAAGCTATCACCTCGTGGTATTTAT ACCAGTGGAAGAGGAAGCTCTGCCGTTGGCTTGACTGCTTATGTCAGCAAAGATCCCGAAACAAAGGAAACGGTACTAGAGAGTGGAGCACTTGTCTTGA GTGACAGAGGCATATGCTGCATTGATGAATTTGACAAAATGTCTGAAAATGCCAGAAGCATGTTACATGAGGTCATGGAGCAACAAACTGTTTCCATTGC GAAGGCTGGGATTATTGCTACTCTTAATGCCAGAACATCAGTTTTAGCTTGTGCCAATCCAATTGGTTCTCGTTATAACCCCAGGTTATCCGTCATCGAC AACATTCACTTACCTCCTACCTTGTTATCCAGGTTCGATTTGATATATTTGATCCTTGACAAAGCCGATGAGCAAACAGACAGGCACCTAGCAAGACACA TCGTTGCTTTACACTTCGAAGATCCTGAGATCGCACAACAGGATGTTTTAGATATTGGCACATTAACTACATATATAACCTATGCTCGTAACCATATTCA CCCTCAGCTATCGGACGAAGCTGCTGAGGAATTAACTCGTGGCTATGTTGAAATGAGAAGGAGAGGGAACTTCCCCGGCAGTAGCAAGAAGGTCATAACT GCAACACCTAGACAAATAGAGAGCTTGATACGTATCAGTGAAGCACTTGCTCGAATTCGTTTCTCCGAACAGGTCGAAAAGAATGATGTAGCAGAGGCAT TCCGGCTTCTTGAAGTTGCTATGCAGCAGTCTGCAACAGACCACTCTACAGGAACAATCGACATGGATCTCATAACAACCGGAGTTTCAGCCAGCGAGAG GATGAGAAGGGAAAATCTCGTAACAGCAACGACCAACATAATCATGGAGAAGCTACAAATCGGAGGACCCTCGATGCGATTAATGGAGATATTGGAGGAG CTAAAGAAGCAGAGCTCTGTGGTTGATGTTCACCTTCATGATCTGAGAAACGCAGTTGCAACAATGGCGAGTGAAGGGCTTGTGGTTGTCCATGGCGACA GTGTTAAGAGAGTGTAA
AA sequence Show only first row Show all	>Lus10028795 pacid=23177301 polypeptide=Lus10028795 locus=Lus10028795.g ID=Lus10028795.BGIv1.0 annot-version=v1.0 MASDTTPTRFNNTPSSPDDSFSSPIGDTVSSPAAGGSRRSRRGRGGRSAGYDTPPNHNNSRFANSESTPTPHHSGSTFRRGRPATPSSTSEGAPSSEAGE DMDEAAAPTFVWGTNISVQDVKSAIQMFLKNFRDERSSRGTEIYEEGKYMKAIHRVLEIEGEWLDVDAHDVFDYNTDLHGKMVRYPLEVLAIFDIVLMDM VSLTNPLFEKHVQVRIFNLKSSTSMRNLNPSDIEKMVSLKGMIIRASSIIPEIREAIFRCLVCGYFSDPIVVDRGRISEPTSCLKQECQAKNAMTLVHNR CRFADKQIVRLQETPDEIPDGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKAWFNLSVTYIDCLHIKKTDKSRMDAMETDN GPEKCDEDVEFDEEKIKQLRELSKLPDIYDRLTRSLAPNIWELDDVKRGLLCQLFGGNALQLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIY TSGRGSSAVGLTAYVSKDPETKETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIATLNARTSVLACANPIGSRYNPRLSVID NIHLPPTLLSRFDLIYLILDKADEQTDRHLARHIVALHFEDPEIAQQDVLDIGTLTTYITYARNHIHPQLSDEAAEELTRGYVEMRRRGNFPGSSKKVIT ATPRQIESLIRISEALARIRFSEQVEKNDVAEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRENLVTATTNIIMEKLQIGGPSMRLMEILEE LKKQSSVVDVHLHDLRNAVATMASEGLVVVHGDSVKRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10028795 [exp]	0	1
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	2.0	0.9660
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	2.6	0.9668
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	6.0	0.9628
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	6.5	0.9494
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	6.6	0.9519
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	12.0	0.9515
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	12.5	0.9431
AT1G77600			ARM repeat superfamily protein...		Lus10025655 [exp]	12.7	0.9443
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	13.5	0.9429
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	13.7	0.9487

Compare expression of checked genes

Lus10028795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.