Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39080 1155 / 0 VHA-A3 vacuolar proton ATPase A3 (.1) AT2G21410 1081 / 0 VHA-A2 vacuolar proton ATPase A2 (.1) AT2G28520 848 / 0 VHA-A1 vacuolar proton ATPase A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017490 [exp] 1404 / 0 AT4G39080 1312 / 0.0 vacuolar proton ATPase A3 (.1) Lus10024304 [exp] 1054 / 0 AT4G39080 1288 / 0.0 vacuolar proton ATPase A3 (.1) Lus10002104 [exp] 1005 / 0 AT4G39080 1226 / 0.0 vacuolar proton ATPase A3 (.1) Lus10036133 [exp] 873 / 0 AT2G28520 1360 / 0.0 vacuolar proton ATPase A1 (.1) Lus10018129 [exp] 870 / 0 AT2G28520 1367 / 0.0 vacuolar proton ATPase A1 (.1) Lus10017488 [exp] 73 / 2e-15 AT4G39080 145 / 2e-41 vacuolar proton ATPase A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G160400 [exp] 1150 / 0 AT4G39080 1245 / 0.0 vacuolar proton ATPase A3 (.1) Potri.009G121400 [exp] 1130 / 0 AT4G39080 1300 / 0.0 vacuolar proton ATPase A3 (.1) Potri.002G028600 [exp] 1089 / 0 AT2G21410 1187 / 0.0 vacuolar proton ATPase A2 (.1) Potri.005G234100 [exp] 1018 / 0 AT2G21410 1194 / 0.0 vacuolar proton ATPase A2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01496 [flax] [poplar] V_ATPase_I V-type ATPase 116kDa subunit family
Representative CDS sequence Show only first row Show all	>Lus10028796 pacid=23177105 polypeptide=Lus10028796 locus=Lus10028796.g ID=Lus10028796.BGIv1.0 annot-version=v1.0 ATGGCGGGCGCAGGTGGAGGAGGATGCTGCCCTCCGATGGATCTCTTCCGCTCCGAGCCGATGCAGCTCATCCAGCTCATCATCCCCATCGAGTCTGTTC ATCTCACCGTCTCTTACCTCGGCGACCTCGGACTCATTCAGTTCAAAGATCTCAATTCCGATAAGAGCCCATTTCAGAGAGCTTATGCAGCTCAGATTAA AAAAACCGGAGAGATGGCCCGAAAGTTAAGGTTCTTCAAAGAGCAAATGGAGAAGGCAGGTGTGTTGCCCGTAACTAAACCCGAGGGGCAACCTGATATC AACATGGATGACTTAGAGGTCAAACTTGGGGAACTTGAGGCAGAGCTGGTTGAAGTGAATGCAAATGATGATAAGTTGCAGCGTGCTTATAATGAACTTG TAGAGTATAAGCTTGTCCTACAGAAGGCTGGGGAATTTTTCTCTTCAGCTCTAAACAGTGCAGCTGCACAGCAGAGGGAAAATGAATCTCAATCTGGGGA AGGATCATTGGAGACTCCTTTACTGGACCAGGAAGCAGCAACTGATTCGTCAAAGCAAGTGAAGCTGGGGTTTCTGACTGGCTTGGTTTCCAAAGAGAAA TCCTTGGCTTTTGAAAGGATTATCTTCCGTGCTACAAGGGGAAATGTATTCCTCAGGCAGACTGCAGTTGATGAACCTGTTACTGATCCTATTTCTGGGG AGAAGGTTGAGAAGAATGTTTTCGTCATATTCTATTCTGGAGAAAGAGCAAAGACCAAAATACTTAAAATATGTGACGCGTTTGGAGCAAATCGTTATCC TTTCTCAGAGGATGTCAGCAAGCAAGGTCAGATGGTTAATCAGGTCACAGGAAGGCTAACAGAGATGAAGACCACCATCGATGCAGGTTTACTTCAGAGA GACAGTTTGCTAAAGACAATTAGCAAACAATACGAGCAGTGGAATTCATTGGTTAAGAAGGAGAAATCTGTCTATCACACCCTCAACATGCTGAGTCTTG ATGTGACAAAAAAATGTCTTGTTGGTGAGGGATGGAGTCCCGTGTTCGCCGGTAAGCAGATCCAGGATGCACTACACCGGGCTTCAATTGATTCAAATTC TCAAATTGGATCCATTTTCCAAGTTTTGGATACAAAGGAAGCACCGCCTACTTATTTCCGTACAAACAAATTCACTACCGCCTTTCAAGAAATCGTTGAT GCATATGGTGTGGCAAAATACCAAGAGGCAAATCCAGGTGTATTTACTATCGTCACGTTCCCCTTCCTGTTCGCAGTCATGTTTGGTGATTGGGGTCACG GAATATGCTTGTTGCTTGCAACACTTGTGTTCATCGCAAGGGAAAAGAAACTATCAAGCCAGAAGCTTGGAGATATCACTGAAATGGCATTCGGCGGTCG TTATGTCATCCTGATGATGTCACTGTTCTCCATTTATACCGGGTTGATCTATAACGAATTTTTCTCAGTGCCCTTTGAATTATTCGGCCGCACTGCTTAC GATTGCCGTGATCCCTCTTGCGGGGATTCCACAACCATGGGTCTGATCAAAGTGCGCCCTGCTTACCCATTTGGTGTTGACCCTGTATGGCACGGTACCC GCAGCGAGCTGCCGTTTCTCAATTCACTGAAGATGAAAATGTCGATCCTTCTTGGAGTTGCCCAGATGAACCTGGGGATCATACTGAGTTATTTCAATGC ACTATACTTCAAGAATAGCTTAAACACCTGGTTCCAATTCATTCCCCAGATGATATTCTTGAACAGTTTGTTCGGCTACTTGTCTGTCCTCATCATTATT AAGTGGATAACTGGCTCGAAAGCCGATTTGTACCATGTCATGATCTACATGTTCCTGAGTCCAACCGACGAGCTTGGCGAAAACCAACTCTTCCCAGGAC AGAGAAATGCTCAGATGATATTGTTGTTGCTGGCCCTCGTCTCCGTGCCGTGGATGCTGTTCCCCAAGCCTTTCCTTTTGAAGAGGCAGTACGAGAAGAC GCACCAAGGCCAAGCATATGCTCCACTCCCGAGCGGGGATGAATCGGTCGAGTTGGTAGCAGCAGCCCACGATCCACAAGGGCATGAGGACATCGCGATC AGTGAAGTCTTGTATTCTACGAAAAGGTTCAACAACGTGATCATCCTCATCGTCGGCATCATTGTCTTCATCTTCGCAACTGTCGGAGTACTTCTCGTGA TGGAGACTCTTAGCGCCTTCCTCCACGCTCTACGTCTCCACTGGGTAGAGTTCCAGAACAAGTTCTACGAAGGTGATGGATACAAGTTCAGTCCCTACTC CTTTGCACTAATCGATTACGAAGAGGAGTAA
AA sequence Show only first row Show all	>Lus10028796 pacid=23177105 polypeptide=Lus10028796 locus=Lus10028796.g ID=Lus10028796.BGIv1.0 annot-version=v1.0 MAGAGGGGCCPPMDLFRSEPMQLIQLIIPIESVHLTVSYLGDLGLIQFKDLNSDKSPFQRAYAAQIKKTGEMARKLRFFKEQMEKAGVLPVTKPEGQPDI NMDDLEVKLGELEAELVEVNANDDKLQRAYNELVEYKLVLQKAGEFFSSALNSAAAQQRENESQSGEGSLETPLLDQEAATDSSKQVKLGFLTGLVSKEK SLAFERIIFRATRGNVFLRQTAVDEPVTDPISGEKVEKNVFVIFYSGERAKTKILKICDAFGANRYPFSEDVSKQGQMVNQVTGRLTEMKTTIDAGLLQR DSLLKTISKQYEQWNSLVKKEKSVYHTLNMLSLDVTKKCLVGEGWSPVFAGKQIQDALHRASIDSNSQIGSIFQVLDTKEAPPTYFRTNKFTTAFQEIVD AYGVAKYQEANPGVFTIVTFPFLFAVMFGDWGHGICLLLATLVFIAREKKLSSQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFELFGRTAY DCRDPSCGDSTTMGLIKVRPAYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNALYFKNSLNTWFQFIPQMIFLNSLFGYLSVLIII KWITGSKADLYHVMIYMFLSPTDELGENQLFPGQRNAQMILLLLALVSVPWMLFPKPFLLKRQYEKTHQGQAYAPLPSGDESVELVAAAHDPQGHEDIAI SEVLYSTKRFNNVIILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPYSFALIDYEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10028796 [exp]	0	1
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10024002 [exp]	2.8	0.8982
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10027827 [exp]	3.0	0.8979
AT1G31730			Adaptin family protein (.1)		Lus10037272 [exp]	5.0	0.9094
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10019313 [exp]	5.1	0.8661
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10028597 [exp]	6.3	0.8837
AT3G58050			unknown protein		Lus10029299 [exp]	7.1	0.8689
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10035737 [exp]	8.5	0.8667
AT3G19870			unknown protein		Lus10012903 [exp]	9.8	0.8779
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10014618 [exp]	10.0	0.8600
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10015440 [exp]	13.0	0.8655

Compare expression of checked genes

Lus10028796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.