Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16430 636 / 0 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 597 / 0 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT1G56360 555 / 0 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 539 / 0 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT2G18130 511 / 4e-180 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT5G34850 493 / 2e-172 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT1G52940 484 / 3e-170 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT3G46120 394 / 5e-135 ATPAP19, PAP19 purple acid phosphatase 19 (.1) AT3G52820 276 / 3e-88 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G20500 268 / 4e-85 ATPAP18, PAP18 purple acid phosphatase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041959 [exp] 744 / 0 AT2G16430 731 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017484 [exp] 720 / 0 AT2G16430 748 / 0.0 purple acid phosphatase 10 (.1.2) Lus10028799 [exp] 720 / 0 AT2G16430 746 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017485 [exp] 679 / 0 AT2G16430 671 / 0.0 purple acid phosphatase 10 (.1.2) Lus10006126 [exp] 601 / 0 AT2G27190 681 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10024299 [exp] 539 / 0 AT2G27190 612 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10039978 [exp] 488 / 3e-170 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10027710 [exp] 482 / 4e-168 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10008054 [exp] 479 / 6e-167 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121200 [exp] 673 / 0 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.004G160100 [exp] 667 / 0 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.005G233400 [exp] 638 / 0 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 633 / 0 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.006G063700 [exp] 501 / 9e-176 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 494 / 3e-173 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 483 / 3e-168 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.011G138200 [exp] 289 / 2e-93 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 270 / 8e-86 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 265 / 1e-83 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10028798 pacid=23177335 polypeptide=Lus10028798 locus=Lus10028798.g ID=Lus10028798.BGIv1.0 annot-version=v1.0 ATGTCGTCTCTCTACTTTCTGTTAGCTTTAGGATTGGCTCTCATCAGCACTGCCAACGGCGGCTACACCAGCAGCTTCGTCAGGAGAGATCAGAAGTCCG TCGACATGCCACTCAACAGCGACGTCTTCCAGCCTCCCTCTGGCTACAACGCTCCTCAACAGGTGCACCTAACCCAAGGAGACCATAACGGGAAGGCCAT GATAGTGTCGTGGGTAACCGCGGACGAACCCGGTTCAAGTCAAGTGGTTTATTGGAAGGAAGATAGTCCACAAGACAAGAAAGTTGCGGAAGGAAAACAC AAGACTTACAAGTACCATAACTATAATTCTGGCTACATTCATCATTGCACCATCCGAAAGCTTGAGTATGACACAAATTATTACTACGAAGTGGGAATCG GTCATACGGTGAGGAGATTCACCTTCGTGACTCCGCCTCCTGTCGATCCTGATGTCCCTTACACATTCGGCATGATCGGAGATCTTGGTCAGACATTTGA TTCCAACATTACACTAACCCACTACGAGAAGAACCCTAGGAAAGCACAAGCATTGTTGTTTGCCGGCGACCTGTCTTACGCCGATCACTACCCGAATCAC GACAATGTGAGATGGGACACATGGGGACGCTTCGTTGAGAGAATCGTTGCGTACCAACCTTGGATCTGGTGCCCCGGCAACCATGAGCTCGACTTTGCTC CTGAAATCGGTGAGAACAAGCCATTTAAGCCGTACATGAACCGGTACCACGTACCATTTAAAGCATCGGGAAGTACTTCTCCACTTTGGTACTCAATCAA GAGGGCTTCAGCTTACATCATTGTCTTGTCTTCATATTCTTCTTACGGTACATATACGCCTCAGTGGGAATGGTTGCAAGCTGAGCTACGAAAGGTTAAC CGGACAGAGACGCCATGGTTGATCGTGATGGTGCATTCTCCATGGTACAACAGCTACGACTACCACTACATGGAAGGAGAGAGCATGAGAGTCATGTTCG AGTCGTGGATCCTCGATGCCAAGGTGGATATCGTCCTTGCTGGCCACGTCCATGGTTACGAACGATCTGAACGAATCTCGAACACAGCTTACAATATTGC GAACAAGAAATGCTCACCGGTGAAGGATCTAAACGCTCCGGTTTACCTCACCCTTGGAGACGGAGGAAACATTGAAGGCTTGGCGTACAACATGAGGAAT CCACAGCCAGAGTACTCTGCCTACAGAGAAGCGAGCTTTGGGCATGCAATATTGGACATAAAGAACAGGACTCATGCTCATTATAGCTGGCATAGGAATC AGGATGGTGTTCCCATGGAGGCTGATTCTTTGTGGCTCCGTAACAGATTCTGGAGCCCTAAATTTGATGATTCTACTAGCAATCAGTCCTGA
AA sequence Show only first row Show all	>Lus10028798 pacid=23177335 polypeptide=Lus10028798 locus=Lus10028798.g ID=Lus10028798.BGIv1.0 annot-version=v1.0 MSSLYFLLALGLALISTANGGYTSSFVRRDQKSVDMPLNSDVFQPPSGYNAPQQVHLTQGDHNGKAMIVSWVTADEPGSSQVVYWKEDSPQDKKVAEGKH KTYKYHNYNSGYIHHCTIRKLEYDTNYYYEVGIGHTVRRFTFVTPPPVDPDVPYTFGMIGDLGQTFDSNITLTHYEKNPRKAQALLFAGDLSYADHYPNH DNVRWDTWGRFVERIVAYQPWIWCPGNHELDFAPEIGENKPFKPYMNRYHVPFKASGSTSPLWYSIKRASAYIIVLSSYSSYGTYTPQWEWLQAELRKVN RTETPWLIVMVHSPWYNSYDYHYMEGESMRVMFESWILDAKVDIVLAGHVHGYERSERISNTAYNIANKKCSPVKDLNAPVYLTLGDGGNIEGLAYNMRN PQPEYSAYREASFGHAILDIKNRTHAHYSWHRNQDGVPMEADSLWLRNRFWSPKFDDSTSNQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028798 [exp]	0	1
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	4.1	0.9460
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10030684 [exp]	5.1	0.9312
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	6.5	0.9431
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	8.1	0.9350
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	9.4	0.9347
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	10.5	0.9347
AT2G23945			Eukaryotic aspartyl protease f...		Lus10023451 [exp]	11.2	0.8934
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	11.5	0.9347
AT5G13660			unknown protein		Lus10005963 [exp]	12.4	0.9347
AT1G73700			MATE efflux family protein (.1...		Lus10042705 [exp]	13.3	0.9347

Compare expression of checked genes

Lus10028798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.