Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16430 713 / 0 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 642 / 0 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT1G56360 592 / 0 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 583 / 0 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT5G34850 527 / 0 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT1G52940 514 / 0 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT2G18130 511 / 3e-180 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT3G46120 386 / 1e-131 ATPAP19, PAP19 purple acid phosphatase 19 (.1) AT3G20500 284 / 3e-91 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52820 268 / 5e-85 ATPAP22, PAP22 purple acid phosphatase 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017484 [exp] 916 / 0 AT2G16430 748 / 0.0 purple acid phosphatase 10 (.1.2) Lus10041959 [exp] 791 / 0 AT2G16430 731 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017485 [exp] 753 / 0 AT2G16430 671 / 0.0 purple acid phosphatase 10 (.1.2) Lus10028798 [exp] 723 / 0 AT2G16430 673 / 0.0 purple acid phosphatase 10 (.1.2) Lus10006126 [exp] 642 / 0 AT2G27190 681 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10024299 [exp] 570 / 0 AT2G27190 612 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10027710 [exp] 523 / 0 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10039978 [exp] 521 / 0 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10008054 [exp] 506 / 1e-177 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121200 [exp] 751 / 0 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.004G160100 [exp] 741 / 0 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.005G233400 [exp] 698 / 0 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 675 / 0 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G024800 [exp] 538 / 0 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.006G063700 [exp] 526 / 0 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 512 / 6e-180 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.011G138200 [exp] 290 / 9e-94 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 274 / 3e-87 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 257 / 1e-80 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10028799 pacid=23177199 polypeptide=Lus10028799 locus=Lus10028799.g ID=Lus10028799.BGIv1.0 annot-version=v1.0 ATGGCTTCTTTTCTGGGTTCTTCTTCGTCTTGTTTCTGGGCTCTGGTTCTCCTTCTTAGCACAGCCGCAATCACCACCACCAATGGCGGCCTTACCAGCA GCTTCGTCAGGAAAGAGCAGAAGTCCGCCGACATGCCTCTCGACAGCGACGTCTTCAAACTTCCTCAAGGCTACAATGCTCCTCAACAGGTTCATATAAC GCAAGGAGACCATGATGGGAAGGCAATGATTGTGTCGTGGGTGACCATGGACGAACCCGGTTCGAGTCGAGTGGTTTACTGGAAGGAATCACAGAGCGAG AAGAAGAATAAGAAGACTGGGAAGTATAACACTTACAAGTTCTATAACTATACTTCTGGCTACATTCATCACTGCACCATTCGGAATTTGGAGTATGACA CGAAATATTACTACGAAGTTGGAACCGGTTACACGGCGAGGAAATTCCACTTCACAACTCCCCCTCCTGTCGGTCCCGATGTTCCTTACACATTTGGCAT GATAGGTGATCTTGGCCAGACTTTCGATTCCAACAGTACACTCACTCATTACGAGAACAACCCGAGTAAAGGACAGGCAGTGCTCTTCGTCGGGGACCTT TCTTACGCCGATAACTACCCGAATCACGACAACACGAGGTGGGACTCGTGGGCGAGGTTCGTTGAGAGGAGCGTAGCTTATCAGCCTTGGATTTGGACTC CCGGAAACCACGAGCTTGACTTCGCCCCTGAAATTGGTGAAAACAAGCCGTTTAAGCCGTTTACTAACCGGTACCATGTACCGTTTAAAGCGTCGGGAAG TACTTCTCCACTTTGGTACTCGATCAAGAGAGCTTCAGCATATATCATTGTCTTGTCTTCATATTCTGCTTACGGTAAATACACTCCTCAGTACCAGTGG CTAGAGGCAGAGCTGCCGAAAGTGAATAGGACAGAGACGCCATGGTTGATCGTGATGGTTCATTCTCCGTGGTACAATAGCTACAACTACCATTACATGG AAGGAGAGACCATGAGGGTCATGTACGAATCATGGCTCGTCAAGGCCAAAGTCGACTTTGTCCTCTCTGGTCATGTCCATGCCTATGAACGATCTGAACG TATCTCGAATGTAGCTTACAACATCGGGAACGGACAATGTGCCCCGGTGAAGAACCAGGATGCTCCGGTCTACATCACCATAGGAGATGGAGGAAACATT GAAGGCTTAGCAAACAATATGACTTATCCACAGCCAGGGTACTCTGCATTCCGCGAAGCGAGCTTTGGACACGCCATTTTGGACATCAAGAACAGGACTC ACGCTCGCTACAGCTGGCATAGGAATCAAGATGGTTATGCTGCGGAAGCTGATTCTATGTGGTTCTACAACAGATTCTGGCACCCTGTTGATGATTCTTC TACTGGAAGCCAATCCTAA
AA sequence Show only first row Show all	>Lus10028799 pacid=23177199 polypeptide=Lus10028799 locus=Lus10028799.g ID=Lus10028799.BGIv1.0 annot-version=v1.0 MASFLGSSSSCFWALVLLLSTAAITTTNGGLTSSFVRKEQKSADMPLDSDVFKLPQGYNAPQQVHITQGDHDGKAMIVSWVTMDEPGSSRVVYWKESQSE KKNKKTGKYNTYKFYNYTSGYIHHCTIRNLEYDTKYYYEVGTGYTARKFHFTTPPPVGPDVPYTFGMIGDLGQTFDSNSTLTHYENNPSKGQAVLFVGDL SYADNYPNHDNTRWDSWARFVERSVAYQPWIWTPGNHELDFAPEIGENKPFKPFTNRYHVPFKASGSTSPLWYSIKRASAYIIVLSSYSAYGKYTPQYQW LEAELPKVNRTETPWLIVMVHSPWYNSYNYHYMEGETMRVMYESWLVKAKVDFVLSGHVHAYERSERISNVAYNIGNGQCAPVKNQDAPVYITIGDGGNI EGLANNMTYPQPGYSAFREASFGHAILDIKNRTHARYSWHRNQDGYAAEADSMWFYNRFWHPVDDSSTGSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028799 [exp]	0	1
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10013404 [exp]	8.1	0.7838
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10037386 [exp]	12.4	0.7723
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040263 [exp]	13.6	0.7031
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10041031 [exp]	15.4	0.7344
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10012054 [exp]	29.1	0.7419
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004696 [exp]	32.0	0.7307
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040262 [exp]	32.4	0.7238
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10004633 [exp]	34.3	0.7325
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	36.4	0.6785
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	37.3	0.7377

Compare expression of checked genes

Lus10028799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.