Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16405 647 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 100 / 3e-23 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 88 / 8e-19 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 72 / 4e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 70 / 2e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 67 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 65 / 5e-11 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 64 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 63 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 60 / 3e-09 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017483 [exp] 811 / 0 AT2G16405 637 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 93 / 2e-20 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 91 / 1e-19 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 89 / 5e-19 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 86 / 3e-18 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10032436 [exp] 77 / 2e-14 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 76 / 2e-14 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 72 / 5e-13 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 71 / 1e-12 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G160000 [exp] 690 / 0 AT2G16405 730 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G121100 [exp] 465 / 7e-161 AT2G16405 517 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 102 / 7e-24 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 95 / 3e-21 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 94 / 5e-21 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G009700 [exp] 79 / 2e-15 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 76 / 2e-14 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 70 / 2e-12 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G086600 [exp] 69 / 3e-12 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G403400 [exp] 67 / 1e-11 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10028800 pacid=23177121 polypeptide=Lus10028800 locus=Lus10028800.g ID=Lus10028800.BGIv1.0 annot-version=v1.0 ATGGATGAGTCGTCGGCGGCCGAGAATCAAAATTCCGGCGGAAGCAACGGAGTCGAGCATACAAACAAGGAGGAGCGGGTGGATGAGGAGGCGAAGAAGA AGACTGTAGATCCGGAGTTCTTCTGCTGCTTGCTTCAGCCTTCTAATGCTGATTCGGATCCTGATTATGTAGGCACGCGGCGGCTCCTCCTCTACCGCAA AGCGGAGTCCGGTTCAGTCCGACGATTTGATTGGAGATGCAGTGGAAAGGGCTACGTCAGTTACCGTAACTACATACGAAGGCCGAGAAATTGGGAGAAG TCGCAAGTTTCAAGCCTCCGAAGCACACCAGGAAACAGATATTATAATAGAACACTTGAACTTGTGATTCTTCCATTTTCGTTGCTTGCTTCGGGTGTTT GTGGCGGTGGGATGTTTTTGGACGTACCTAGTGTTAATCTATCTTCAACCCGTAGGACAAGTGTCAGCTCAGGCGGAAGTGATATTGATCACCCACGTGA GCGACGACCTGAACCAGCCTATTCTTTTGTTGGAATGCATTGCATCTTTGATCAGAGCAAAGCTGCTGTGACAGTTCTGAAGTTTGGTAAAAGGAGTTCT GATCTACTGGCATATGGGGCATCAGATGGTACATTAACGGTCTGTACAGTCTCCCAGCCACCTTCAGTCCTCAAACAACTTAATGGACACTCTAAAGATG TCACAGACTTTGACTTCGCCTCCAACAATCAGTACATTGCATCTTCATCAATGGATAAAACTGTGAGAGTGTGGGAGTTATCAAAAGGAACTTGCATTCG AGTCATTTATGGAGTCACCCCACAACTATGCATCCGTTTTCACCCTGTAAATAACAACTTCCTATCCGCTGGCAATGTAAACAGAGAAATCAGCGTATTC AACTTCAGCACAGGCAGGACTATTGCCAAAACACTTCTCGGCAATGCGATAACCTCGATGGACCATGATCATACCGGTAAGCTCATCTTCTGTGGAGACG GACAGGGATGTATATACTCCATGAGCATGGACTCCCGTACAGGTGCCTTGTCACGCTCTCATCGTTATCGGAGTAGCGGCAAGACCAAATCCCCAGTAAC GACTGTCCAGTACCGGAGCTTCTCTCTGCTGGCACGTGGACCCGTGTTGCTCACGTGCACTCAGGATGGGAATTTATCCTTGTTCAGTGTGGCTCTGGAA ATAAAAGGCTATCTAACTCTTTACTGCTCGCTAAAGTTGGCGCCACGAGTACACAGCATGCGAGCCTCGTTCTGCCCTCTTCTCTCCCTCGAGAAAGGAG AATACATTGTTGCTGGAAGTGAGGATTCAAATGTCGATTTCTACGATCTGACTAAGCCAAAGAATCCTTGCGTCAACAAACTACAGGGTCACCAGTTTCC GGTAATCAGTGTCACGTGGAACTACGGCGAAAACTTGCTGGCTTCCTCAGATGAACACGGTGTTGTTATCGTGTGGAAGAGGGCCAAGACAAGTTAA
AA sequence Show only first row Show all	>Lus10028800 pacid=23177121 polypeptide=Lus10028800 locus=Lus10028800.g ID=Lus10028800.BGIv1.0 annot-version=v1.0 MDESSAAENQNSGGSNGVEHTNKEERVDEEAKKKTVDPEFFCCLLQPSNADSDPDYVGTRRLLLYRKAESGSVRRFDWRCSGKGYVSYRNYIRRPRNWEK SQVSSLRSTPGNRYYNRTLELVILPFSLLASGVCGGGMFLDVPSVNLSSTRRTSVSSGGSDIDHPRERRPEPAYSFVGMHCIFDQSKAAVTVLKFGKRSS DLLAYGASDGTLTVCTVSQPPSVLKQLNGHSKDVTDFDFASNNQYIASSSMDKTVRVWELSKGTCIRVIYGVTPQLCIRFHPVNNNFLSAGNVNREISVF NFSTGRTIAKTLLGNAITSMDHDHTGKLIFCGDGQGCIYSMSMDSRTGALSRSHRYRSSGKTKSPVTTVQYRSFSLLARGPVLLTCTQDGNLSLFSVALE IKGYLTLYCSLKLAPRVHSMRASFCPLLSLEKGEYIVAGSEDSNVDFYDLTKPKNPCVNKLQGHQFPVISVTWNYGENLLASSDEHGVVIVWKRAKTS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16405			Transducin/WD40 repeat-like su...		Lus10028800 [exp]	0	1
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	2.0	0.8554
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040564 [exp]	3.2	0.8813
AT1G50120			unknown protein		Lus10013430 [exp]	5.7	0.8115
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	6.3	0.8398
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	8.9	0.8349
AT2G43240			Nucleotide-sugar transporter f...		Lus10025486 [exp]	12.2	0.8134
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10029001 [exp]	13.4	0.8400
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10034610 [exp]	13.5	0.8361
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10017889 [exp]	15.0	0.8162
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	15.3	0.8300

Compare expression of checked genes

Lus10028800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.