Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39100 324 / 2e-113 SHL1 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G22140 294 / 1e-101 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G04260 201 / 9e-66 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G14700 54 / 2e-08 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G23120 52 / 6e-08 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G12620 52 / 8e-08 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT3G43990 47 / 4e-06 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G11560 45 / 3e-05 bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G02470 44 / 3e-05 Alfin AL6 alfin-like 6 (.1.2) AT1G14510 44 / 5e-05 Alfin AL7 alfin-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017482 [exp] 441 / 1e-159 AT4G39100 326 / 2e-114 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10041960 [exp] 338 / 2e-119 AT4G39100 291 / 7e-101 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10015543 [exp] 290 / 7e-100 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10020020 [exp] 286 / 2e-98 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10017968 [exp] 263 / 2e-86 AT1G28560 334 / 1e-111 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2) Lus10033410 [exp] 47 / 6e-06 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10042137 [exp] 45 / 3e-05 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10008492 [exp] 44 / 5e-05 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008527 [exp] 44 / 6e-05 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G159900 [exp] 377 / 1e-134 AT4G39100 323 / 2e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.009G121000 [exp] 367 / 7e-131 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.011G010901 [exp] 298 / 4e-103 AT4G22140 401 / 1e-143 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.006G270601 [exp] 297 / 6e-103 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.002G226000 [exp] 296 / 1e-102 AT4G22140 379 / 2e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.014G157100 [exp] 295 / 4e-102 AT4G22140 385 / 7e-138 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.004G004900 [exp] 294 / 8e-102 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.003G127400 [exp] 48 / 3e-06 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.001G104300 [exp] 47 / 6e-06 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.009G054300 [exp] 44 / 4e-05 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF01426 [flax] [poplar] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Lus10028801 pacid=23177268 polypeptide=Lus10028801 locus=Lus10028801.g ID=Lus10028801.BGIv1.0 annot-version=v1.0 ATGACAAAGCCAAAAGCTCCTCGTCGAAATCTGGACTCCTACTCTGTCAAGCACATCAACAACAAAACCATCAAACCCGGGGACTGCGTGCTAATGCGAG CTTCCGAGCCGTCTAAGCCGTCCTACGTGGCCAAGATCGAGCGGATCGAGTCCGACAGCCGAGGCGCCAACGTGAAGCTGCAGGTGAGGTGGTATTACCG GCCGGAGGAATCGATCGGAGGCCGCCGGCAGTTTCATGGCTCGAAAGAAGTGTTCCTGTCCGATCACTACGATTTCCAGCGCGCGGATACGATCGAAGGG AAGTGTACGGTCCACAGTTTCAAGAGTTACTCGAAGCTCGACGCTGTTGGGAACGAGGATTTCTTCTGCCGGTTCGAGTATAACTCCACCACCGGAGCTT TCAATCCCGATAGAGTCGCCGTGGATTGTAAATGTGAGATGCCTTATAACCCTGATGACCTAATGGTGCAGTGTGAAGGTTGCAGCGACTGGTTTCACCC TGCTTGTATAGAAATGACAGTAGAGGAAGCGAAAAGACTAGACCACTTCTTCTGCGAGAATTGCTCGTCCCAAGTCCAAAAGAAGTTGGAGGATTCACAT GATACTACCACCAGAGCGAGACAGTCAGATACTAAGGTAACCAGCCGTATATTCTCTTCGCGAAGCACTCAAATCGACTGA
AA sequence Show only first row Show all	>Lus10028801 pacid=23177268 polypeptide=Lus10028801 locus=Lus10028801.g ID=Lus10028801.BGIv1.0 annot-version=v1.0 MTKPKAPRRNLDSYSVKHINNKTIKPGDCVLMRASEPSKPSYVAKIERIESDSRGANVKLQVRWYYRPEESIGGRRQFHGSKEVFLSDHYDFQRADTIEG KCTVHSFKSYSKLDAVGNEDFFCRFEYNSTTGAFNPDRVAVDCKCEMPYNPDDLMVQCEGCSDWFHPACIEMTVEEAKRLDHFFCENCSSQVQKKLEDSH DTTTRARQSDTKVTSRIFSSRSTQID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39100		SHL1	short life, PHD finger family ...		Lus10028801 [exp]	0	1
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	2.6	0.8307
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	5.3	0.8158
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	5.5	0.7893
AT1G67170			unknown protein		Lus10030976 [exp]	5.7	0.8001
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	8.2	0.7912
AT5G25170			PPPDE putative thiol peptidase...		Lus10018326 [exp]	8.7	0.7483
AT2G47970			Nuclear pore localisation prot...		Lus10027618 [exp]	9.8	0.7617
AT2G27285			Coiled-coil domain-containing ...		Lus10020557 [exp]	12.0	0.7469
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	12.6	0.7902
AT3G54630			unknown protein		Lus10030643 [exp]	16.1	0.7057

Compare expression of checked genes

Lus10028801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.