Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34610 370 / 2e-120 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G16400 364 / 4e-119 HD BLH7 BEL1-like homeodomain 7 (.1) AT1G75410 311 / 3e-98 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT1G19700 306 / 7e-96 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G35940 255 / 2e-75 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT4G36870 245 / 6e-71 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 240 / 3e-70 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT2G27220 228 / 1e-67 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT5G41410 232 / 3e-67 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT1G75430 212 / 2e-63 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000184 [exp] 1161 / 0 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 1124 / 0 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10010633 [exp] 296 / 2e-91 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10004201 [exp] 298 / 5e-91 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 294 / 8e-90 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10033192 [exp] 281 / 1e-85 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2) Lus10013579 [exp] 271 / 1e-82 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10016790 [exp] 229 / 2e-67 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022485 [exp] 221 / 2e-62 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G159300 [exp] 773 / 0 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 758 / 0 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.002G031000 [exp] 365 / 3e-117 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.006G203000 [exp] 297 / 7e-91 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 296 / 4e-90 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 294 / 6e-90 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 295 / 7e-90 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.003G131300 [exp] 259 / 7e-77 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.001G100800 [exp] 252 / 3e-74 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.005G232000 [exp] 245 / 8e-74 AT1G75430 308 / 8e-103 BEL1-like homeodomain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10028802 pacid=23177146 polypeptide=Lus10028802 locus=Lus10028802.g ID=Lus10028802.BGIv1.0 annot-version=v1.0 ATGGCAACTTATTATCCTGGTGCCAACAATCAGAGGGAGGGGCCTCCAATGATATACCATCTACCGGGCGGTGGTTCGTATTCGGAGACGACTCCAGTTC TTACTGGCAACATGATGATGTACATGAATGCTGCTGGTTCGTATTCGAATGCTCAGCAGCAAAACAACAGCTGCATTGATATCCAGTCCGTCGAAGGGTC AGCCTCGTCTCAGCAGGAGATGTTAGCGAATCTCGGAGGGTCTCGAGTTAGTGATCATCAGCACGATTACAACACATGGAGGGATATGCAGTCGATCGGT AGCACCGATGCTTCTGGCAGCATTCTTCAAGGTGGTGGACAGAGTTTGCAAGGGCAAGGCTTGTCTTTAAGCCTCGGCACACAAATCCCATCTGGAATCC AAATGCATTCCATCCCATACCGAAATGCGAACCAAGGATTCACATCGTTCTTGAGTACTACGAATCCATCCTCTTCGTCGAATAGGGATGATGAGTTGAG AAGTGCTGAGTATATGCAGCAGCATGTTGGTGGCTATCAGCCTCAGGATTCCAGTAAAGGTGATTTCGCTCAGTATGGAATGACGAGCATTGCAAGGACT ATCCCTAATTCCAAGTACCTCAAGGCTGCACAGCAACTGCTCGACGAGGTTGTCAATGTTCGCAAAGCTTTGAGACAGCCTGATAAGGAGAAAAGCCAGA AAGGAAATGAGAATGAGATGAACAGCTCCAAGGAAGGTGACAGTGGTTCTAAGAACGGACCTTCGGACCCTCAGGAATCTGCAAGCAATCCAGCTAGTGA GCTCTCGCATTCGGAGAGACAGGAATTGCAGAATAAGTTGACTAAGCTTTTGTCCATGTTGGATGAGGTTGACAGGAGGTACAAGCAGTATCATCACCAG ATGCAGATAGTGGTGTCATCATTTGATGTCATAGCAGGCTGCGGAGCAGCCAAGCCTTACACCGCACTTGCGTTGCAGACGATCTCTCGCCACTTCCGGT GCTTGAGGGACGCAATTAATGGACAGATAAGATCGGTGAGGAAGAGCTTAGGGGAGCAAGAAACGTCAGAGAACAGCAAAGGCGTTGCCATAACGAGACT TCGGTATGTGGATCAGCAGCTAAGGCAGCAAAGGGCTCTTCAACAACTTGGCATGATGCAACAGCACACTTGGAGACCACAGAGAGGGTTGCCTGAAAAC TCCGTCTCGATTCTTCGTGCTTGGCTGTTCGAGCATTTTCTCCATCCTTATCCAAAGGATTCTGACAAGATAATGCTGGCTAGGCAGACGGGATTAACTC GAGGCCAGGTCTCGAATTGGTTCATCAACGCACGAGTTCGTTTATGGAAGCCTATGGTGGAAGAAATGTACAAGGAAGAAACTGGTGATATGGAAATGGA CTCGAACTCATCCTCTGAAAATGCTGCAAGAGCACTTTCGAAAGCTGACATGAGAAGCTCCGAGGACGGAGGAGGGGAAGAAATGCAACAAACTGCCAGC TCAGCTGCCACGGAAAGGTACAGTGGCGCTCAAGCTATGGAGAAAACTGATCATGTTCATCATAACATGGAGATGGCAGGCTCATCTTCAAGGGCACACT TCCAGTTCGGACCACACGGGGATGGCCTAACTGATTATGGCTTGATGAAGCTAAGGGAGGAACAGAGGCCTGGAGTCGTTGATGATTGTGGTGGTCTTTA CAACGATGCCATTGTCGGGGGAAGTGATCGGTTTATGGCTGCAGCAGCTGCAGCTTACCAGATTCAGGAAATGGGTAGGTATGGAAGTGGAGGAGGAGTG TCCTTGACGTTAGGGTTGCAGCATTGTGAAGGTGGTAACTTGCCGATATCCGGTGCAGTCCACCATCCGGGTTTTGTTCCGATGAGAGGGAGTGACGATA TGTACAATGCTGCTGCTGGAGCAACATTGTCGGTAGATGGAGAAACGAACGAGTTCGAATGTGTAAACCCGGGGAATAGGCAGCAGCAGCAGCAGAGGTT CAACTCTTCCCATTTGTTACATGATTTTGTAGCATGA
AA sequence Show only first row Show all	>Lus10028802 pacid=23177146 polypeptide=Lus10028802 locus=Lus10028802.g ID=Lus10028802.BGIv1.0 annot-version=v1.0 MATYYPGANNQREGPPMIYHLPGGGSYSETTPVLTGNMMMYMNAAGSYSNAQQQNNSCIDIQSVEGSASSQQEMLANLGGSRVSDHQHDYNTWRDMQSIG STDASGSILQGGGQSLQGQGLSLSLGTQIPSGIQMHSIPYRNANQGFTSFLSTTNPSSSSNRDDELRSAEYMQQHVGGYQPQDSSKGDFAQYGMTSIART IPNSKYLKAAQQLLDEVVNVRKALRQPDKEKSQKGNENEMNSSKEGDSGSKNGPSDPQESASNPASELSHSERQELQNKLTKLLSMLDEVDRRYKQYHHQ MQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAINGQIRSVRKSLGEQETSENSKGVAITRLRYVDQQLRQQRALQQLGMMQQHTWRPQRGLPEN SVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRGQVSNWFINARVRLWKPMVEEMYKEETGDMEMDSNSSSENAARALSKADMRSSEDGGGEEMQQTAS SAATERYSGAQAMEKTDHVHHNMEMAGSSSRAHFQFGPHGDGLTDYGLMKLREEQRPGVVDDCGGLYNDAIVGGSDRFMAAAAAAYQIQEMGRYGSGGGV SLTLGLQHCEGGNLPISGAVHHPGFVPMRGSDDMYNAAAGATLSVDGETNEFECVNPGNRQQQQQRFNSSHLLHDFVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10028802 [exp]	0	1
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10000184 [exp]	1.4	0.8081
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	2.0	0.8274
AT1G74780			Nodulin-like / Major Facilitat...		Lus10033115 [exp]	5.2	0.7793
AT5G60580			RING/U-box superfamily protein...		Lus10037410 [exp]	10.2	0.7655
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	17.5	0.7575
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10014417 [exp]	18.5	0.7363
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	20.9	0.7658
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10042149 [exp]	23.0	0.7260
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10040677 [exp]	24.3	0.6741
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10016791 [exp]	25.9	0.7396

Compare expression of checked genes

Lus10028802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.