Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80530 629 / 0 Major facilitator superfamily protein (.1) AT4G34950 307 / 2e-97 Major facilitator superfamily protein (.1) AT3G01930 286 / 2e-89 Major facilitator superfamily protein (.1.2) AT2G16660 284 / 8e-89 Major facilitator superfamily protein (.1) AT5G14120 281 / 2e-87 Major facilitator superfamily protein (.1) AT5G50520 271 / 1e-83 Major facilitator superfamily protein (.1) AT5G50630 271 / 1e-83 Major facilitator superfamily protein (.1) AT2G28120 222 / 6e-65 Major facilitator superfamily protein (.1) AT2G39210 212 / 7e-61 Major facilitator superfamily protein (.1) AT2G34350 192 / 4e-54 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017480 [exp] 963 / 0 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 830 / 0 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 829 / 0 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 590 / 0 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 309 / 4e-98 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 307 / 2e-97 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10025123 [exp] 290 / 2e-90 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1) Lus10035203 [exp] 290 / 2e-90 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10032034 [exp] 286 / 5e-89 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012300 [exp] 727 / 0 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 702 / 0 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 647 / 0 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 316 / 7e-101 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.012G098900 [exp] 308 / 1e-97 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 301 / 6e-95 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 293 / 4e-92 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 280 / 9e-87 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 276 / 5e-85 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.009G006400 [exp] 206 / 2e-59 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10028803 pacid=23177290 polypeptide=Lus10028803 locus=Lus10028803.g ID=Lus10028803.BGIv1.0 annot-version=v1.0 ATGCCACCGAACATAATCGTGAAAGGAGGGAGCAGGCCGCCATGGGTGGGGCTAGCAGCGGCGGTGTGGGTGCTAGTAGCTGCAGGGAACGGCTACACTT TCCCGCTCTACTCCCCGGCTCTCAAATCAGTGATGGGTCTTAGCCAGCAGCAGGTCACCATACTTGGGGTCGCCAATGATATCGGGGAGAGCGTTGGATT GCTCCCTGGCGTCGCCTGTAACAAGTTCCCTCCATGGGCTGTTCTCTCCGTCGGCGCCGTCATGTGTTTTTTGGGGTACGGCGTGTTGTGGCTTACCGTC AGTCAGATCGTCTCTGGTTTGCCTTACTGGCTGTTATGGATCGCGCTTGTTATCGCCACAAACAGCAACGCATGGTTTGGCACACCGGTGCTCGTAACTA ACATGAGGAACTTCCCCCTCAGCAGGGGCACAGTATCTGGAATACTCAAAGGCTACGTTGGCGTCTCAGCTGCAGTTTACACAGTAATATACAGCATGGT GCTCAAGGACAACGCCACTAATTTCCTACTGTTCCTCACCATTGGCATCCCCATTATATGCTTGCTGATGATGTATTTCATCCGGGCGTGCACTCCAGCT TCCGGAGAAGACTCATCGGTTCACATCCATTTCGTCTTCACTCAGGCCACAAGTGTTCTGCTGGCCATTTACCTTCTCACAACCACGATAATAACCGATG TGTTCCCCCTCGGCAATGCTGTTTGCTATACTCTGGTTGCTATAATGGTGGCTCTTTTGATCTCCCCTCTTGTGATTCCTGTTAAAATGACTCTATTCCC TGTTACTTCTTCCAAGAAACGTAGCCCCCTGCCAGTTGAAGGTGTTGAATCGACATCAACAGAGCCTTTGTTATTGCTGCAACAATCGTCCTCGGCTTAT CTCGGGAGCTTCATCGAGAACGAGGATACTTCAGATGTTCAAACACTTCTTGCCGTTGGGGAAGGAGCTGTAAAGAAGAAGAGGAAACCGAAGAGAGGCG AGGACTTCAACTTCCTCGAGGCCCTAGTGAAGGCTGATTTCTGGCTTCTTTGGGTTGTGTACTTTCTCGGAACCGGTGCAGGAGTTACTTTCCTCAATAA CTTGGCTCAAATCGGAGTCGCATTTGGACTTAATGACACAACAATTTTGCTCGCTCTCTTTAGCTTCTGCAACTTTGTTGGACGCCTTGGATCTGGCGTT GTTTCTGAGTATTTTGTCAGGTCGAGTACTACAACTCCAAGGACCATGTGGATCACAGTAGCACAAGCAATCATGGTTGTGGTTTTCATTCTGTTTGGTT TGGCCGTTGATGGCATACTCTATTTAGCAACTGCTCTGCTCGGTGTCTGCTACGGGATTCTCTATTCGGTGGTGGTTCCGACCACCTCCGAGCTCTTTGG CTTGGAACATTTTGGTATCATTTACAACTTCTTGCAACTGGGGAACCCTCTTGGTGCACTTCTCTTCTCTGGAGGACTTGCTGGGACCATGTATGATATA GAAGCCTCTAAGCAAGGAAGCTCCACCTGCATCGGTCACGACTGCTTTAAATTGACGTTCTTCGTTCTGGCGGCCATCTGTGGCCTAGGAACTCTTTTGA GCGTAATCTTGACGATTAGAATAAAGCCAGTTTACCAAATGCTCTATTCTGGAGGATCCTTCCGAGTGATGCAGCCTTCTTCACACCATTGA
AA sequence Show only first row Show all	>Lus10028803 pacid=23177290 polypeptide=Lus10028803 locus=Lus10028803.g ID=Lus10028803.BGIv1.0 annot-version=v1.0 MPPNIIVKGGSRPPWVGLAAAVWVLVAAGNGYTFPLYSPALKSVMGLSQQQVTILGVANDIGESVGLLPGVACNKFPPWAVLSVGAVMCFLGYGVLWLTV SQIVSGLPYWLLWIALVIATNSNAWFGTPVLVTNMRNFPLSRGTVSGILKGYVGVSAAVYTVIYSMVLKDNATNFLLFLTIGIPIICLLMMYFIRACTPA SGEDSSVHIHFVFTQATSVLLAIYLLTTTIITDVFPLGNAVCYTLVAIMVALLISPLVIPVKMTLFPVTSSKKRSPLPVEGVESTSTEPLLLLQQSSSAY LGSFIENEDTSDVQTLLAVGEGAVKKKRKPKRGEDFNFLEALVKADFWLLWVVYFLGTGAGVTFLNNLAQIGVAFGLNDTTILLALFSFCNFVGRLGSGV VSEYFVRSSTTTPRTMWITVAQAIMVVVFILFGLAVDGILYLATALLGVCYGILYSVVVPTTSELFGLEHFGIIYNFLQLGNPLGALLFSGGLAGTMYDI EASKQGSSTCIGHDCFKLTFFVLAAICGLGTLLSVILTIRIKPVYQMLYSGGSFRVMQPSSHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80530			Major facilitator superfamily ...		Lus10028803 [exp]	0	1
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	2.2	0.9726
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	2.4	0.9553
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10023860 [exp]	4.0	0.9512
AT1G02460			Pectin lyase-like superfamily ...		Lus10038059 [exp]	6.3	0.9495
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10039928 [exp]	6.3	0.9276
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10037572 [exp]	7.1	0.9556
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10022772 [exp]	8.3	0.9389
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10018088 [exp]	8.8	0.9095
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	9.5	0.9540
AT2G28560		ATRAD51B, RAD51...	DNA repair (Rad51) family prot...		Lus10038467 [exp]	9.6	0.9251

Compare expression of checked genes

Lus10028803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.