Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21470 838 / 0 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G19180 129 / 7e-32 ECR1 E1 C-terminal related 1 (.1) AT5G06460 107 / 1e-23 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G30110 102 / 4e-22 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G55130 66 / 4e-11 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT1G05350 65 / 7e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G32410 53 / 4e-07 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT1G05180 49 / 1e-05 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017479 [exp] 1194 / 0 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10034043 [exp] 133 / 4e-33 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 133 / 4e-33 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10012507 [exp] 113 / 2e-25 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031862 [exp] 106 / 4e-23 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031292 [exp] 105 / 5e-23 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10022510 [exp] 73 / 4e-13 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10000697 [exp] 72 / 6e-13 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10031562 [exp] 54 / 4e-07 AT1G05180 778 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120200 [exp] 927 / 0 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 913 / 0 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.010G031900 [exp] 137 / 2e-34 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.008G204000 [exp] 136 / 4e-34 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.009G075700 [exp] 115 / 3e-26 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 112 / 3e-25 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G280600 [exp] 112 / 5e-25 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G355800 [exp] 74 / 2e-13 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.015G096300 [exp] 61 / 1e-09 AT1G05350 571 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G229100 [exp] 54 / 3e-07 AT1G05180 884 / 0.0 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family CL0063 [flax] [poplar] PF10585 [flax] [poplar] UBA_e1_thiolCys Ubiquitin-activating enzyme active site
Representative CDS sequence Show only first row Show all	>Lus10028804 pacid=23177210 polypeptide=Lus10028804 locus=Lus10028804.g ID=Lus10028804.BGIv1.0 annot-version=v1.0 ATGCCTCCTCACACCTTACTGACCCCATCCCACCGCAACACCACCAATCCACATCCCCTAACCTACACCAACACCAGTCACCAAGGAGACAGACTCATTA CAGGCTCGCAACTCAGCTGCGACTCGATCGCGACCAGACCCCATCGTCACCGCCCTAAAGGTCGCGGCCTTGTCCCTTACCGACTAAGAAGCAGGAACGA CTCCTACCCTCCCTTAGCAGTTCAATTCAGGCTGTTCGCATCCGAGTTTGCTAGTCTCCTCCTTCCCTCCCTTCTAATGGCGTCCCTGCAACAGTCACCC GCCATAAAGGGCGCCAAAGTCCTGATGGTTGGAGCTGGTGGTATTGGCTGCGAGCTTCTCAAGACCCTTGCCCTCTCTGGATTTGAGGATATTCATATTA TCGATATGGATACTATAGAAGTTAGCAACCTCAATAGACAGTTTTTGTTTCGACAGTCACATGTTGGGCAGTCTAAGGCCAAGGTTGCTAGAGATGCTGT ACTGAGGTTTAGGCCCCATATAAGCATTACTTCCTATCATGCAAATGTGAAAGATACTGACTTCAATGTGGACTTCTTCAAGCAATTCAGTGTTGTTCTG AATGGGCTTGACAACGTGGATGCAAGGCGGCATGTGAATCGCCTGTGCTTGGCTGCTGAAGTTTCAGTACATGTGAAAGGAAGAACCGATTGCTATGAAT GTAACCCCAAACCCGCTCCTAAGACATATCCAGTTTGCACAATTACTAGTACTCCTTCAAAGTTTGTTCACTGTATTGTTTGGGCAAAGGAGCTTCTTTT TGCGAAGTTGTTTGGTGACAAAAATCAGGACAATGATTTAAATGTTCACTCTGGTGATGCTGCTGGCTCTTCAGAACAAGTTGATGACGTGTTTGAACGC AAAGCTGATGAAAGCATTGAACAATATGGGAAGCGAATATATGATCATGTATTTGGTTATAATATCGAACGGGCTTTATCTAATGAAGAGACATGGAAAA ATCGACACAAGCCTAAACCCATATATGTCAGGGACGTTATATCTGCTGAGCTGATGCAGACAAATGGAAGTTCTGATAAAGGGGGCCCAGGTGATGATCC TTTGTCAGTTTCTGCCATGGCATCATTAGGCCTGAAGAATCCACAGGAATTGTGGAGCCTCGACGAAAATTCAAGAGTTTTTCTTGAAGCTTTGAATCTG TTCTTTGATAAAAGAGAAAAGGAGATCGGAAACCTTAGTTTCGACAAAGATGATCCACTTGCTGTTGAATTTGTTACTGCTGCTGCAAATATCCGTGCTG CCTCGTTTGGCATCACTTTGCATAGCCTTTTTGAAGCAAAAGGTATTGCTGGTAATATCGTGCATGCAGTTGCGACAACAAATGCGATCGTAGCTGGTTT AATTGTTATTGAAGCAATCAAGGTGTTGCAGGAAGATGTTGACCAGTACAGGACGTCATACTGTCTTGAACACAAGACCAAAAAAATGCTTATAATGCCG GTTGAACCCTTTGAGCCAAACAAGAACTGCTGTGTCTGTTCCGAGACACCGCTAACATTGGAGGTCAACACTAATCGTTCGAAGCTACGGGACTTTGTGG ATAAGATAGTTAAAGCCAAGCTTAGCATGACCTCTCCATTGATTATGCATGGGTCTGCACTTCTTTATGAGGTTGGTGATGATCTCGACAAAGACATGGT TGCTAACTACTCTGCTAACCTTGAAAAGGTGCTATCTAGTCTACCGTCTCCGGTTACTGGTGGGACAATGCTTACGGTGGAGGATCTGTTACAGGAGTTT ACTTGCAGTATCAACATAAAACATAGGGAGGACTTTGATGAGGAGAACGAACCAGACATGATGGTTCTCCATGGATGGACTCAAGCTCCTCCTTCAAAGC CTATAGATGATAGCAAGAAGACCCCAGTTGGGAATGGGGACCGTACATTAGAAACCAAACCCTCAGAGGCCCAAGCTGATGCCGAAGTCAAACTCGATTC TGAGGAGATTGAGGTTGCAGGGAAGAAGAGAAAAGCACCAGATTCCGAGGAGATCACTGTCGTTGACCCTGAAACTCTCGTCGACGAAGCTGGAAATCAC AGCAAAGTTCACAAGATTGATGACGAAAATGAAAACGACGACCTTGTCATGCTGGATCATTGGGATGTAGACACAAGTAAGAAGCAGAAATTGCGATAG
AA sequence Show only first row Show all	>Lus10028804 pacid=23177210 polypeptide=Lus10028804 locus=Lus10028804.g ID=Lus10028804.BGIv1.0 annot-version=v1.0 MPPHTLLTPSHRNTTNPHPLTYTNTSHQGDRLITGSQLSCDSIATRPHRHRPKGRGLVPYRLRSRNDSYPPLAVQFRLFASEFASLLLPSLLMASLQQSP AIKGAKVLMVGAGGIGCELLKTLALSGFEDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLRFRPHISITSYHANVKDTDFNVDFFKQFSVVL NGLDNVDARRHVNRLCLAAEVSVHVKGRTDCYECNPKPAPKTYPVCTITSTPSKFVHCIVWAKELLFAKLFGDKNQDNDLNVHSGDAAGSSEQVDDVFER KADESIEQYGKRIYDHVFGYNIERALSNEETWKNRHKPKPIYVRDVISAELMQTNGSSDKGGPGDDPLSVSAMASLGLKNPQELWSLDENSRVFLEALNL FFDKREKEIGNLSFDKDDPLAVEFVTAAANIRAASFGITLHSLFEAKGIAGNIVHAVATTNAIVAGLIVIEAIKVLQEDVDQYRTSYCLEHKTKKMLIMP VEPFEPNKNCCVCSETPLTLEVNTNRSKLRDFVDKIVKAKLSMTSPLIMHGSALLYEVGDDLDKDMVANYSANLEKVLSSLPSPVTGGTMLTVEDLLQEF TCSINIKHREDFDEENEPDMMVLHGWTQAPPSKPIDDSKKTPVGNGDRTLETKPSEAQADAEVKLDSEEIEVAGKKRKAPDSEEITVVDPETLVDEAGNH SKVHKIDDENENDDLVMLDHWDVDTSKKQKLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	0	1
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	4.5	0.8679
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	4.6	0.8716
AT4G08310			unknown protein		Lus10003736 [exp]	5.3	0.8779
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10022388 [exp]	6.0	0.8624
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10027084 [exp]	8.5	0.8577
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	9.8	0.8784
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	10.4	0.8100
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	12.1	0.8562
AT5G59210			myosin heavy chain-related (.1...		Lus10040740 [exp]	13.0	0.8527
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	13.3	0.8532

Compare expression of checked genes

Lus10028804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.