Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21480 1060 / 0 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 1055 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 861 / 0 Protein kinase superfamily protein (.1) AT5G54380 739 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT5G59700 667 / 0 Protein kinase superfamily protein (.1) AT3G46290 662 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G24010 630 / 0 Protein kinase superfamily protein (.1) AT3G51550 597 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT1G30570 565 / 0 HERK2 hercules receptor kinase 2 (.1) AT3G04690 565 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017478 [exp] 1529 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10021632 [exp] 782 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10000562 [exp] 782 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10037887 [exp] 735 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10042844 [exp] 681 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 679 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10039274 [exp] 611 / 0 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10027509 [exp] 608 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10014185 [exp] 592 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120400 [exp] 1085 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 1075 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.015G061700 [exp] 857 / 0 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.001G405500 [exp] 766 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G128000 [exp] 760 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.009G026600 [exp] 714 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 702 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.010G213200 [exp] 621 / 0 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.016G138700 [exp] 616 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 589 / 0 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10028805 pacid=23177329 polypeptide=Lus10028805 locus=Lus10028805.g ID=Lus10028805.BGIv1.0 annot-version=v1.0 ATGGCGACGGAAAGAACACGAAAAAAACCGGGGAACCCTCCACCTCCATCACCACCGCCGTTACCAAATTCAACCTCAACCCAATTCAATTCATTCGTCA ATCGAGTGTCAGCTAATTTCCCCTTTTTGTTGCTCATCCTCCTCTTTTTCCTCTCGTCCTCCGCCGCCGTCCATGCGGCGCCGTTCAAGCCGGAAGACAA TTTCCTAATCGCATGCGGATCCAAGTCCAAGCTCCAGCTCCCCGACGGCCGGAAATTCATGAGCGACGACGAATCCCACCAGTTCCTCAAATCCGACGAG AAGAATTTAACCTCCGCCTCTTCGTCGGCCAACGTTCCTCTGCCGATTTACTTGAATTCGAGAGTTTTTCTCAAAGAGGCTGTCTATACTTTCAATCTTA AAGCCCCCGGGTGGCATTGGGTCCGACTCTATTTTTACCCGATGAAGAACGACCGGTTTGATCTCAAATCGGCTCGGTTCTCTGTCACGACCGATAAGTA CGTGCTCCTCCACGGGTTCAACCCGAATAACGAAACCGCGGTTTCGAGGGAGTATCTTGTTAATCTGGATGAGGAAGTTTTCTCGATTCATTTCAAGCCC GGGGAAGATTCGATGGCGTTTGTTAATGGGATTGAACTCGTTTCTGCTCCCGACGAGTTGATCGGAGACGAAGCCACTGGGCTTTTCCCCGTGAGTGGGT TTCCCGGGTTGGGCAAGTATGCTTATAATGTTGTTTACAGGTTGAACATGGGTGGGCAAGTGCTCACTCCAAGGAACGACACCTTAGGTAGGACATGGGA GAACGACCGCCGCTACCTAAAGGCCGACGTCCTCGCCTCAAACGTCACGATCCCCACGTCGGCGATCAAGTACGGCAGCAACATTTCCCCCTTCATAGCT CCGGCGCCGGTGTACGCCTCCGGCGAGAAGATGGCTGATTCACAAACAAACCAAGCCAATTTCAACATCACCTGGAACTTTGAAGCCGACGCCGCCTTCA ATTACTTGATCCGCCTCCATTTCTGCGACATCATAAGCAAATCCCTAAATTCTCTCTACTTCAACGTCTACATCAACGGCAGAACTGCAATCTCCGCTCT CGATCTCTCGGCCCTCACCGGCCAATTAGCGTCGCCGTATTTCAAAGACATAGTGGTCAGCTCGGCTCTGATAACTAAAGGCATCATCGTCGAAATCGGC CCGACCCACGAGGATACCGGATCGAAAGACGCGATCTTGAACGGGTTGGAGATTCTGAGGATGAGCAATTCGGTCGATAGCTTGGACGGCGAGTTCGGAA TCGACGGCCGGCAAGCTATGGCGACGAAGAAGACGGTGGCGGCGGTAGGGTTTGCGATGATGTTTGGAGCTTTTGTAGGGTTGGGCGCGATGGTACTTAA GTGGCATAAGAGGCCTCAAGATTGGCAGAGGAGGAATAGCTTCTCTTCTTGGTTGCTTCCTCTCCACGCAAGCGACACTAGCTTCATGTCGAAAGGCTCG GGGAAGTCGAATTTCAACTCCTCGACTTTCGGGCTGGGACGGTTCTTCACGTTCGTGGAGTTACAGGAGGCTACAAAGGGGTTCGATTCGAGCTCGATCA TCGGAGTTGGAGGGTTTGGAAACGTGTACATTGGAGTGATCGATGAAGGAGCCACTAAGGTTGCTGTGAAAAGAGGGAATCCACAATCCGAGCAAGGAAT CAACGAGTTCCAGACCGAAATCCAGATGCTTTCGAAGCTTAGACATAGGCATTTGGTGTCGTTGATCGGATACTGCGACGAGAATGACGAGATGATCTTG GTTTATGAGTTCATGTCTCAAGGGCCGTTTCGAGACCATTTGTATGGGAAGAATTTACCACCATTGTCATGGAAGCAGAGGTTGGAGATAAGTATAGGAG CAGCTAGAGGGCTACATTACCTTCATACCGGAACGGCTCAAGGGATCATCCATAGGGATGTTAAGACGACGAATATCTTACTAGACGATGCGTTTGTGGC TAAAGTTGCGGACTTTGGGCTGTCGAAAGACGGGCAGATGGGGCAGAACTATGTGAGCACTGCTGTCAAAGGGAGTTTTGGGTACTTGGATCCTGAGTAC TTTAGGAGGCAACAGCTGACCGATAAATCGGATGTTTACTCGTTCGGAGTCGTGTTACTTGAGGTGCTGTGCGCTAGGCCGGCGATCAATCCTGCATTGC CGAGGGAGCAAGTGAACTTGGGGGAATGGGCTATGCAGTGGAAGAGGAAAGGGTTGCTGGAGAAGATCATTGACCCTCACCTAGCTGGGACTATATGTCC TGAATCGTTGACCAAGTTTGCCGAGGCTGCTGAGAAGTGCTTGGCGGATTACGGTGTCGATAGGCCTAGCATGGGGGATGTGCTGTGGAATTTGGAGTCT GCTTTGCAGCTTCAGGAGATATTCATGCAAGGAGGGAAAAAAGATGGTGATGATGATGATGACGATAAGGATGATGATAGTAAGGAATCATCTCCAAGTT CAGCATCACCTGGTATGCCTGCTGTTGTTCCTACTACTACTACTACTGCTACTCCTCCTCTGGTACCTTCGACCGCCGATGATCGCCCTGTCGAGAATCA GAATCGGGGGGTGCAGCAGCCTGGAGGTGGTGGTACCAGTACCATTAGTGAACACTCTGGTACAGCCATGTTTGCACAGTTCTCTGACCTTAGTGGAAGG TAA
AA sequence Show only first row Show all	>Lus10028805 pacid=23177329 polypeptide=Lus10028805 locus=Lus10028805.g ID=Lus10028805.BGIv1.0 annot-version=v1.0 MATERTRKKPGNPPPPSPPPLPNSTSTQFNSFVNRVSANFPFLLLILLFFLSSSAAVHAAPFKPEDNFLIACGSKSKLQLPDGRKFMSDDESHQFLKSDE KNLTSASSSANVPLPIYLNSRVFLKEAVYTFNLKAPGWHWVRLYFYPMKNDRFDLKSARFSVTTDKYVLLHGFNPNNETAVSREYLVNLDEEVFSIHFKP GEDSMAFVNGIELVSAPDELIGDEATGLFPVSGFPGLGKYAYNVVYRLNMGGQVLTPRNDTLGRTWENDRRYLKADVLASNVTIPTSAIKYGSNISPFIA PAPVYASGEKMADSQTNQANFNITWNFEADAAFNYLIRLHFCDIISKSLNSLYFNVYINGRTAISALDLSALTGQLASPYFKDIVVSSALITKGIIVEIG PTHEDTGSKDAILNGLEILRMSNSVDSLDGEFGIDGRQAMATKKTVAAVGFAMMFGAFVGLGAMVLKWHKRPQDWQRRNSFSSWLLPLHASDTSFMSKGS GKSNFNSSTFGLGRFFTFVELQEATKGFDSSSIIGVGGFGNVYIGVIDEGATKVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENDEMIL VYEFMSQGPFRDHLYGKNLPPLSWKQRLEISIGAARGLHYLHTGTAQGIIHRDVKTTNILLDDAFVAKVADFGLSKDGQMGQNYVSTAVKGSFGYLDPEY FRRQQLTDKSDVYSFGVVLLEVLCARPAINPALPREQVNLGEWAMQWKRKGLLEKIIDPHLAGTICPESLTKFAEAAEKCLADYGVDRPSMGDVLWNLES ALQLQEIFMQGGKKDGDDDDDDKDDDSKESSPSSASPGMPAVVPTTTTTATPPLVPSTADDRPVENQNRGVQQPGGGGTSTISEHSGTAMFAQFSDLSGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39110			Malectin/receptor-like protein...		Lus10028805 [exp]	0	1
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	7.6	0.8621
AT2G46100			Nuclear transport factor 2 (NT...		Lus10007918 [exp]	10.4	0.8673
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10036729 [exp]	16.9	0.8536
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020415 [exp]	18.4	0.8546
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10024219 [exp]	21.4	0.8600
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10013978 [exp]	28.1	0.8476
AT3G15810			Protein of unknown function (D...		Lus10007118 [exp]	28.8	0.7785
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10002723 [exp]	34.1	0.8139
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031744 [exp]	35.6	0.8503
AT5G06470			Glutaredoxin family protein (....		Lus10013597 [exp]	36.7	0.7982

Compare expression of checked genes

Lus10028805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.