Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39150 518 / 0 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 497 / 3e-178 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G76700 353 / 2e-120 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G21080 352 / 4e-120 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G77020 338 / 8e-115 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G48030 76 / 7e-15 GFA2 gametophytic factor 2 (.1) AT3G62600 73 / 2e-14 ATERDJ3B DNAJ heat shock family protein (.1) AT2G22360 71 / 2e-13 DNAJ heat shock family protein (.1) AT1G71000 68 / 2e-13 Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 69 / 7e-13 Molecular chaperone Hsp40/DnaJ family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017472 [exp] 699 / 0 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 605 / 0 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 600 / 0 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10013198 [exp] 373 / 2e-128 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10030713 [exp] 368 / 3e-125 AT1G21080 573 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10042774 [exp] 327 / 2e-110 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10029744 [exp] 286 / 2e-94 AT1G77020 452 / 6e-159 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10035855 [exp] 79 / 4e-16 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 79 / 6e-16 AT5G48030 516 / 0.0 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119800 [exp] 526 / 0 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.004G158300 [exp] 494 / 3e-177 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.005G260400 [exp] 380 / 6e-131 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G000300 [exp] 370 / 3e-127 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G074600 [exp] 336 / 4e-114 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 332 / 2e-112 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G271300 [exp] 84 / 1e-17 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 82 / 6e-17 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.008G018800 [exp] 73 / 3e-14 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 73 / 4e-14 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10028809 pacid=23177122 polypeptide=Lus10028809 locus=Lus10028809.g ID=Lus10028809.BGIv1.0 annot-version=v1.0 ATGGTGAAAGAAACAGCTTATTATGATGCTTTGGGTGTCAGCGTGGACGCCTCAGCAGCTGAGATCAAGAAGGCTTACTACGTCAAGGCAAGAATCGTTC ATCCGGATAAAAACCATGGCGATCCGAAGGCTGCAGAGAACTTCCAGAAACTTGGAGAGGCGTATCAGGTGTTAAGCGATCCTGAGAAGCGTGAAGCTTA CGACAAGCATGGAAAGGATGGAGTAACACAGGATGCAATGATGGACCCTGCAGCTGTGTTTGGGATGGTATTTGGTAGTGACTCCTTCGAAGATTATATT GGTCAGCTTGCTTTGGCAACGATATCATCGATTGACATGGAAGAAAGTGGTTTGGATCCCGAGACACACAAGCAAAGAGTTCAGGAGAAGATAAAGTTAA TGCAGAAAGAGAGGGAAGAGAAACTGATAACGAACCTCAAGAACCATCTCGAACCGTTTGTTCAAGGACGAGTGGACGAATTTGTGAAGTGGGCCAATTC CGAGGCACAACGCCTCTCTGGTGCTGCATTCGGTGAAGCTATGCTGCATACGATTGGATATATATACACTCGCAAAGCTGCTAAAGAGATTGGAAAGGAC AACCGGTATATGCGAGTACCGTTTTTAGCAGAGTGGGCACGAGATAAAGGGCACCAGATGAAGTCTCAAGTAATCGCTGCTTCAGGTGCTGTCTCTTTGA TCCAGATACAAGAGGATCTGAAGAAACTGAACCAAGCAGAAAACAAAGAAGAGAACTTGATGAAAGCTATGGAGGAAAAGAAGGATGTCATGCTTCAATC TCTTTGGAAGATCAATGTAGTTGATATCGAGACTACTTTATCTCGCGTCTGCCAAGCTGTGCTTCGAGACCCTAGCGTGTCCAAAGATGTTCTGAAATCA CGAGCCAAAGCGTTGAAGAAACTTGGAACAGTCTTTCAAGGTGCCAAAGCTGCTTACTCCAGGGAGAACAGTCTGCGCCACGAGACTAACATCGTGAACC ATGGTGCAACGTCGCAGTCGGTCTGA
AA sequence Show only first row Show all	>Lus10028809 pacid=23177122 polypeptide=Lus10028809 locus=Lus10028809.g ID=Lus10028809.BGIv1.0 annot-version=v1.0 MVKETAYYDALGVSVDASAAEIKKAYYVKARIVHPDKNHGDPKAAENFQKLGEAYQVLSDPEKREAYDKHGKDGVTQDAMMDPAAVFGMVFGSDSFEDYI GQLALATISSIDMEESGLDPETHKQRVQEKIKLMQKEREEKLITNLKNHLEPFVQGRVDEFVKWANSEAQRLSGAAFGEAMLHTIGYIYTRKAAKEIGKD NRYMRVPFLAEWARDKGHQMKSQVIAASGAVSLIQIQEDLKKLNQAENKEENLMKAMEEKKDVMLQSLWKINVVDIETTLSRVCQAVLRDPSVSKDVLKS RAKALKKLGTVFQGAKAAYSRENSLRHETNIVNHGATSQSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	0	1
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	1.0	0.8642
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	2.4	0.8626
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	2.4	0.8634
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10023543 [exp]	3.2	0.8338
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	4.0	0.8620
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	6.3	0.8184
AT1G12230			Aldolase superfamily protein (...		Lus10032243 [exp]	6.5	0.7816
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	6.9	0.8282
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10040427 [exp]	7.7	0.7943
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10040296 [exp]	9.9	0.8020

Compare expression of checked genes

Lus10028809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.