Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60790 972 / 0 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT3G54540 434 / 4e-144 ABCF4, ATGCN4 ATP-binding cassette F4, general control non-repressible 4 (.1) AT1G64550 431 / 7e-143 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT5G09930 226 / 2e-65 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT5G64840 225 / 9e-65 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT3G28390 66 / 5e-11 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28415 64 / 2e-10 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT1G28010 64 / 2e-10 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT1G27940 62 / 8e-10 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G28860 62 / 1e-09 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038681 [exp] 1033 / 0 AT5G60790 1021 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10037947 [exp] 998 / 0 AT5G60790 990 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10029363 [exp] 432 / 5e-143 AT3G54540 1139 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10016184 [exp] 429 / 7e-142 AT3G54540 1141 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10032431 [exp] 428 / 8e-142 AT1G64550 1244 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10023043 [exp] 428 / 6e-135 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10006804 [exp] 214 / 2e-60 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10005798 [exp] 212 / 5e-60 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10000013 [exp] 84 / 1e-19 AT3G54540 172 / 8e-52 ATP-binding cassette F4, general control non-repressible 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G214300 [exp] 1043 / 0 AT5G60790 944 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.009G007800 [exp] 1025 / 0 AT5G60790 955 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.010G254400 [exp] 434 / 9e-144 AT3G54540 1049 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.001G087300 [exp] 428 / 8e-142 AT1G64550 1145 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Potri.008G003300 [exp] 427 / 3e-141 AT3G54540 1060 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.007G080600 [exp] 228 / 7e-66 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.005G084800 [exp] 220 / 9e-63 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.011G133800 [exp] 65 / 1e-10 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.002G019600 [exp] 64 / 3e-10 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.005G062800 [exp] 60 / 1e-09 AT4G33460 346 / 5e-121 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10028810 pacid=23177238 polypeptide=Lus10028810 locus=Lus10028810.g ID=Lus10028810.BGIv1.0 annot-version=v1.0 ATGGTGTCAGACGCGAGCAAGAAGAAGGCAGCGCAGAAGAAGGCCGCTCTCGCTGCTAAGAGAGGAGGTAAGGCACCTGCCGCCGTGGCAACCTCGAAAG CGGCAGCCGCCGCCGATCAGAATGGGAGTTCTGCCGATAAGATTTCCAATGGAATTGGAGCTCTTTTGATTTCGGATCGTACTTGTACGGGCGTCCTTTG CTCCCATCCTCTATCCAGAGATATTCGGATCGAGTCTTTGTCAGTGACGTTTCATGGACATGATCTCATTGTAGATTCCATGTTGGAACTTAACTATGGA CGACGGTATGGGTTGCTTGGATTAAATGGATGTGGGAAGTCAACGTTGCTTACTGCGCTAGGATGCCGAGAGCTTCCAATTCCCGACCACATGGATATAT ATCATCTTTCCAGGGAGATAGAAGCCTCAGATATGTCTGCCCTTGAAGCTGTCATTTGCTGTGATGAGGAGAGAATGAAACTGGAGAAAGAAGCTGAGGT GTTGGCTACACAGGATGATGGTGGTGGCGAACAACTTGAGCGTGTTTATGAGCGTTTAGATGCTTTGGATGCATCCACAGCTGAAAAACGTGCTGCCGAA ATCTTATTTGGTCTTGGCTTCAACAAGCAAATGCAGGCAAAGAAGACTAGAGATTTCTCCGGTGGTTGGAGGATGAGGATTGCTCTGGCCAGAGCTTTGT TCATGAACCCCACTATTCTTTTGCTTGATGAACCTACCAATCATCTTGATTTAGAAGCTTGTGTGTGGTTGGAAGAAACGTTGAAGAAGTTTACCCGAAT CCTAGTGGTGGTTTCCCACTCCCAAGATTTTCTGAATGGCGTCTGCACAAACATTATTCACATGCAAAACAGGACTTTGAAGATTTACTCCGGAAACTAC GATCAGTATGTTCAGACTCGTGCTGAGCTCGAAGAGAATCAAATGAAGCAGTACAAATGGGAGCAGGAGCAGATTGCTAACATGAAGGAGTACATTGCTC GCTTCGGACATGGATCGGCCAAGTTGGCTCGTCAGGCACAAAGCAAGGAGAAGACTCTAGCCAAGATGGAGCGTGGTGGACTCACCGAAAAAGTGGCACG AGACAGAATCCTAGTTTTCCGCTTCGTTGATGTCGGAAAGCTTCCACCACCAGTACTTCAATTTGTCGAAGTGGCATTCGGCTACACACCTGAAAATCTC ATCTACAAGAACCTCGACTTTGGGGTTGATCTGGATTCGAGAATTGCACTGGTCGGGCCAAACGGTGCCGGCAAGAGTACACTGTTGAAGCTGATGACTG GTGAGTTAGTCCCTACCGACGGCATGGTTCGGAGGCACAACCACCTGAGGACAGCTCAGTTCCATCAACACTTGGCAGAGAAACTGAACTTGGATATGTC TGCTCTCCAGTACATGATGAGTGAGTATCCTGGGAACGAAGAAGAGAGGATGAGGGCTGCAATAGGGAAATTCGGACTGACGGGAAAGGCTCAGGTGATG CCGATGAAGAACTTGTCAGATGGACAGAGGAGCAGAGTGATCTTTGCCTGGTTGGCGTACAGGCAGCCCCATATGCTGCTTCTGGATGAGCCAACGAACC ACTTGGATATCGAAACCATAGACTCCCTGGCGGAGGCACTGAATGATTGGGATGGTGGGTTGGTGCTTGTGAGTCACGATTTCAGGCTGATTAACCAGGT GGCAGAGGAGATTTGGGTGTGTGAGAATCAGGCAGTTACTCGTTGGGAAGGTGACATCATGGCGTTCAAGGAACATCTCCGTGAGAAAGCTGGCCTATCT GACTGA
AA sequence Show only first row Show all	>Lus10028810 pacid=23177238 polypeptide=Lus10028810 locus=Lus10028810.g ID=Lus10028810.BGIv1.0 annot-version=v1.0 MVSDASKKKAAQKKAALAAKRGGKAPAAVATSKAAAAADQNGSSADKISNGIGALLISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSMLELNYG RRYGLLGLNGCGKSTLLTALGCRELPIPDHMDIYHLSREIEASDMSALEAVICCDEERMKLEKEAEVLATQDDGGGEQLERVYERLDALDASTAEKRAAE ILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEETLKKFTRILVVVSHSQDFLNGVCTNIIHMQNRTLKIYSGNY DQYVQTRAELEENQMKQYKWEQEQIANMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDRILVFRFVDVGKLPPPVLQFVEVAFGYTPENL IYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGELVPTDGMVRRHNHLRTAQFHQHLAEKLNLDMSALQYMMSEYPGNEEERMRAAIGKFGLTGKAQVM PMKNLSDGQRSRVIFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNDWDGGLVLVSHDFRLINQVAEEIWVCENQAVTRWEGDIMAFKEHLREKAGLS D

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10028810 [exp]	0	1
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10021920 [exp]	1.0	0.9231
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10020345 [exp]	2.8	0.9086
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023423 [exp]	3.0	0.9123
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036088 [exp]	3.2	0.9076
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	3.5	0.9164
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	5.7	0.8909
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	7.3	0.8996
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	10.9	0.8843
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Lus10041018 [exp]	11.5	0.9008
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	12.2	0.8694

Compare expression of checked genes

Lus10028810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.