Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36840 289 / 7e-96 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT2G39570 208 / 3e-64 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT1G12420 44 / 6e-05 ACR8 ACT domain repeat 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017470 [exp] 510 / 0 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10023921 [exp] 306 / 1e-102 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10014418 [exp] 305 / 5e-102 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10004948 [exp] 224 / 4e-70 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005157 [exp] 196 / 2e-59 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005447 [exp] 191 / 5e-58 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10001702 [exp] 191 / 2e-57 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228500 [exp] 392 / 2e-136 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.008G033200 [exp] 382 / 1e-132 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.011G154600 [exp] 309 / 8e-104 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G442600 [exp] 306 / 2e-102 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.010G207700 [exp] 221 / 3e-69 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.008G052900 [exp] 218 / 3e-68 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.001G237100 [exp] 216 / 2e-67 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028812 pacid=23177175 polypeptide=Lus10028812 locus=Lus10028812.g ID=Lus10028812.BGIv1.0 annot-version=v1.0 ATGGGGATATTGCATGAAGATGTGGTGTTGATTAATCAAGCTGAGAAGGCAGGTGAATCTACTGTGATTACTGTCAATTGCCCTGATAAAACTGGGCTGG GGTGTGATTTGTGCGGGGTTATTCTCCTCTTTGGCCTCAGCATTTCCAAAGGAGATTTTCAAACGGATGGGAAATGGTGTTACTTAGTGTTTTGGGTGGT GGGGATGCAGAAAACAAGGTGGAATTTATTGAAGAAGAAGTTACTTGAGGAGTGTCCTTCCCACTTCTCCACATCAAGGATCTACTACTATCGTCCAGAG AATCAGCAGCCTACCCCGCCAATCGTCTTCCTCTTGAAGTTTTGGTGTTCTTGTGATAGGAGAGGCCTCCTGGATGGTAAAATTTCGAAAGAGCTGCTAC ATACGAAAAAGAGACAGGAGGAGACATTCAGCCGTCTGAAAGATGTGTTAAGCGATGCATTGACAAGTTACGAGATCGAGTTGGTTGGTACAGAGATAGC TACTGCATGTTCACAAGTATCTTCATTTCTTCCTTCTGCAATCACAGCAGACATGTTCAACTTAGAGCTCCCTGCCGACAACAGACAGCAGAGCGGTTTT TTCACATCCACTCCGGTTTCAGTGACAGTGGACAACACCCTCAGTCCCTCTCACACCCTTGTTCAGATCTTCTGCAAGGATCACAAAGGCCTCATTTACG ATATCATGCGAACCCTAAAGGATTACAACATACAGATTTCATATGGGAGGTTCTTTGCTAATCCTAGAGGGAACTGTGAGGTAGACTTGTTCATAATGCA AGCAGAGTGGTGGAAACATCGTTTTCTGTCACACTTGCGTGCTGGAGATTGTATTGTATGCACCAAGTCAAGTTTACCACCACCCCCCCCAAATACTTTT CGTATTAGCAACACAGTTTGA
AA sequence Show only first row Show all	>Lus10028812 pacid=23177175 polypeptide=Lus10028812 locus=Lus10028812.g ID=Lus10028812.BGIv1.0 annot-version=v1.0 MGILHEDVVLINQAEKAGESTVITVNCPDKTGLGCDLCGVILLFGLSISKGDFQTDGKWCYLVFWVVGMQKTRWNLLKKKLLEECPSHFSTSRIYYYRPE NQQPTPPIVFLLKFWCSCDRRGLLDGKISKELLHTKKRQEETFSRLKDVLSDALTSYEIELVGTEIATACSQVSSFLPSAITADMFNLELPADNRQQSGF FTSTPVSVTVDNTLSPSHTLVQIFCKDHKGLIYDIMRTLKDYNIQISYGRFFANPRGNCEVDLFIMQAEWWKHRFLSHLRAGDCIVCTKSSLPPPPPNTF RISNTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10028812 [exp]	0	1
AT2G46915			Protein of unknown function (D...		Lus10007214 [exp]	4.2	0.8465
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Lus10026005 [exp]	6.8	0.7873
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10037211 [exp]	17.1	0.8071
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10036638 [exp]	20.0	0.7958
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10013319 [exp]	26.9	0.7805
AT2G27590			S-adenosyl-L-methionine-depend...		Lus10020593 [exp]	29.5	0.7604
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10003876 [exp]	33.4	0.8054
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10007634 [exp]	35.1	0.7933
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10008032 [exp]	38.7	0.8014
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10027649 [exp]	39.8	0.7951

Compare expression of checked genes

Lus10028812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.