Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24430 218 / 7e-66 HXXXD-type acyl-transferase family protein (.1) AT3G26040 187 / 3e-54 HXXXD-type acyl-transferase family protein (.1) AT5G47950 165 / 3e-46 HXXXD-type acyl-transferase family protein (.1) AT1G24420 164 / 1e-45 HXXXD-type acyl-transferase family protein (.1) AT3G30280 162 / 5e-45 HXXXD-type acyl-transferase family protein (.1) AT5G23970 155 / 3e-42 HXXXD-type acyl-transferase family protein (.1) AT4G15390 150 / 1e-40 HXXXD-type acyl-transferase family protein (.1) AT5G47980 131 / 1e-33 HXXXD-type acyl-transferase family protein (.1) AT4G15400 122 / 2e-30 HXXXD-type acyl-transferase family protein (.1) AT3G48720 107 / 3e-25 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017469 [exp] 748 / 0 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 534 / 0 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 526 / 0 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10037952 [exp] 281 / 3e-92 AT1G24430 130 / 5e-35 HXXXD-type acyl-transferase family protein (.1) Lus10017468 [exp] 286 / 4e-92 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) Lus10028814 [exp] 281 / 5e-90 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 246 / 2e-76 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 242 / 6e-75 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 238 / 2e-73 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034300 [exp] 441 / 1e-152 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 427 / 4e-147 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 399 / 2e-136 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 383 / 4e-130 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 275 / 6e-88 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 275 / 6e-88 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 273 / 5e-87 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 273 / 5e-87 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 271 / 4e-86 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 269 / 1e-85 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10028813 pacid=23177106 polypeptide=Lus10028813 locus=Lus10028813.g ID=Lus10028813.BGIv1.0 annot-version=v1.0 ATGGAGGTAAGAATCATTTCAAAGGAATTAGTAAAGCCATCTTCCCCTGAAGCCACAGAATCCAAACCTCCACACAAACTCTGCCTCTTCGACCAGCTCA CTCCCTTAACTTTCGTCCCCAACGCCCAATTTTACCCATACAATGATCATCATTCCCATTCCAGAAATATCATTCCTCACCTGAAACGCTCCCTTTCTCA AACTCTGGACATATACTATCCTTTTTCAGGCAGGACTGACCAATCAAACTTGTTCGTCCACAGCTTCAACAAAGGTCTCCCATTCACTCACGCCCAGGTC AATTCCGGCCTCTCCCATTTCCTAAAACTACACAACAACACCGAGCTTCTCAACCTCTTCCTCCCCCGTCAGCCCTTTCAGAAAGAAGAAGAACCTGAGG CTCAGGAATACCCTGTTATGGAGTGTCAGGTCTCTGTTTTCTCCTGCGGCGGAATCGCATTGGGTTGGACTGCTTCCCACAAATTGGTCGATGGCTGCTC TGCAAATTCCTTTCTCACCACTTTCTCCGCATTTTGCCGCGGTTCCCCAAAAGACGTCGTTTCTCCCAACTTCACCCTCGCGGCGGAGCTCTTCCCTCCG ATTAACCCTCCCCCTGAAAGATTCGTCAAATTCATGGACGCGCTTTGGTTTACCGAAGCCAATTACGTCACCAGACGATTCGTTTTCTCTCCATCTTCAA TATCTCGGATCAAATCCATGGTTCCGGTTAAGCTGTCCAGAGTGAATGCCCTGGCCTGCTTTATATGGCAACGCGCCATGGCAGCATTGATGGTTGTCTC CTCCTCCTCCGTCACCACCGGCGAGAGAACGTCGGTTCTGGTGGAGGCGGTGAACTTGAGGGATGCGACGGACCCACCGCTGCCGCAGGGGTCAGTAGGG AACTTGTTCTGGTGGGCAACCGCAGCCGGAAGTCCGGACAAGGAGATGGCGGAGCTTGGGAGCATGGTGAGCGAGGCAGTCGGGGTGTACCGGTCCGATT CAGGCTACGTGGAGTCGATCCAGGGGGAGAGCGGGTACGATTCAGTGTCGGGTTACTTCGAGCAACTGGAAGCTATGATGTCTCAGGACGGGGAGGTGGA CATAGTGGCATTCACTAGCTGGACCGGGTTCGAGTACCCGGCTCTTGATTTCGGGTGGGGGAAACCCATTTGGGCGACAGTGATGGGGAAAGTGGGTCGG GCATTTCGGAATATGACGGTCTTAATCGATTCGGGCGATGCGAATGGAGGAATTGAGGCTTGGATTACCTTGGAGGAGAAAAGGATTAGTGTCGTTGAAC GAGATCCTCTGTTTTTGAAGTTTGCTTCTCCAAATCCCAGGATCTCAAACCTTTGA
AA sequence Show only first row Show all	>Lus10028813 pacid=23177106 polypeptide=Lus10028813 locus=Lus10028813.g ID=Lus10028813.BGIv1.0 annot-version=v1.0 MEVRIISKELVKPSSPEATESKPPHKLCLFDQLTPLTFVPNAQFYPYNDHHSHSRNIIPHLKRSLSQTLDIYYPFSGRTDQSNLFVHSFNKGLPFTHAQV NSGLSHFLKLHNNTELLNLFLPRQPFQKEEEPEAQEYPVMECQVSVFSCGGIALGWTASHKLVDGCSANSFLTTFSAFCRGSPKDVVSPNFTLAAELFPP INPPPERFVKFMDALWFTEANYVTRRFVFSPSSISRIKSMVPVKLSRVNALACFIWQRAMAALMVVSSSSVTTGERTSVLVEAVNLRDATDPPLPQGSVG NLFWWATAAGSPDKEMAELGSMVSEAVGVYRSDSGYVESIQGESGYDSVSGYFEQLEAMMSQDGEVDIVAFTSWTGFEYPALDFGWGKPIWATVMGKVGR AFRNMTVLIDSGDANGGIEAWITLEEKRISVVERDPLFLKFASPNPRISNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10028813 [exp]	0	1
AT4G13710			Pectin lyase-like superfamily ...		Lus10038157 [exp]	1.7	0.7946
AT5G59350			unknown protein		Lus10040839 [exp]	4.9	0.7291
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	18.4	0.7463
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Lus10013439 [exp]	19.0	0.7724
AT5G19210			P-loop containing nucleoside t...		Lus10034052 [exp]	20.0	0.7262
AT1G68470			Exostosin family protein (.1)		Lus10013701 [exp]	26.7	0.6965
AT3G50790			esterase/lipase/thioesterase f...		Lus10017327 [exp]	27.8	0.6182
AT2G29980		AtFAD3, FAD3	fatty acid desaturase 3 (.1.2)		Lus10036184 [exp]	32.5	0.6744
AT2G16800			high-affinity nickel-transport...		Lus10014116 [exp]	33.8	0.7046
AT3G52610			unknown protein		Lus10014214 [exp]	34.3	0.6876

Compare expression of checked genes

Lus10028813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.