Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) AT1G24430 178 / 6e-51 HXXXD-type acyl-transferase family protein (.1) AT4G15390 167 / 1e-46 HXXXD-type acyl-transferase family protein (.1) AT1G24420 160 / 4e-44 HXXXD-type acyl-transferase family protein (.1) AT3G30280 142 / 1e-37 HXXXD-type acyl-transferase family protein (.1) AT5G47950 137 / 1e-35 HXXXD-type acyl-transferase family protein (.1) AT5G47980 135 / 3e-35 HXXXD-type acyl-transferase family protein (.1) AT5G23970 128 / 2e-32 HXXXD-type acyl-transferase family protein (.1) AT4G15400 127 / 5e-32 HXXXD-type acyl-transferase family protein (.1) AT1G03390 89 / 8e-19 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017468 [exp] 905 / 0 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 315 / 5e-103 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 313 / 2e-102 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 290 / 1e-93 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 283 / 1e-90 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10005361 [exp] 235 / 3e-72 AT3G26040 213 / 9e-64 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 233 / 2e-71 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 229 / 4e-70 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 226 / 1e-68 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034300 [exp] 370 / 1e-124 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 368 / 2e-123 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 355 / 8e-119 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 318 / 1e-104 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 274 / 3e-87 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 273 / 4e-87 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 273 / 4e-87 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 273 / 5e-87 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 271 / 2e-86 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 271 / 2e-86 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10028814 pacid=23177317 polypeptide=Lus10028814 locus=Lus10028814.g ID=Lus10028814.BGIv1.0 annot-version=v1.0 ATGGCGACCAACAGCTTCCAAGTGGCCATCACTTCTAGAGAAACAATCAAGCCGTCTTCCCCTACAATACACCTCAACAAGCCATACAGTCTCTCCTGCT TCGACCAGCTCGTCCCATCCACCTACATTCCCCTTCTCATCTTCCACTCCTTGGCCAACGCCAATTTCGACATCTCCCATGTCATCGAGCACGCCAAATT CTGCCTCTCCGAGACCCTTAACGTCTTCTACCCTCTCTCCGGCAGGATCCAATGCAATTCATCTGTAGGAAACTTTGACTCCGGCATCCCGTTCCTCACC GCCAAGGTTACCTCCCCTCTTTCACATTTCCTCGATTCTCACCAGCACAATGGAAGCTACCTCAACCAGCTCCTCCCTTGTCGTCCCTTCGCAAGGGAAC TGCAGGAAGACATCCCACTGATGGCTTTCCAGATGAATATATTTTCTTGTGGCGGAATCGCCCTGGGCTGTGGCATGTGCCACAAGATTGGCGATTCCGC CACAGGACTGTCCTTTGCAAGGACATGGGCGGCTTTCTTCAGCGGATCCCGTCGAAGAATTGCCCGCCCTGATTTTGTCAAGGCGTCTTCCCATTTCCCT TCTAGATCCCCGATGCCCGAGCAGTACACTTCCTTGATCGAGAAGATGTGGTTCAAGGACACGAATTTCGTCACTAAGAGGTTCTTCTTCAACCCGGAAT CCATCGCCTCCCTCCGTCAGGAATCCCGCGACGGATCCTCCTTGACGCTGGCTCTCCCAACCACTGTCGAGGCGTTGTCAGGTTTCGTCTGGAAATGCTT CATCTCAGCATCCAGGAAGGCAGCAACTCTGTCAGGGTCGCCTCCGAAACCTTCCATGCTAGGGCTGGAAGTGAACCTGAGGAAGAGATGTAACCCGGGA CAGCTCGAAGCAGCGTTCGGAAACCTGTTTTGGCCGGCGACAGCCGTCGTCGGTCCAGAACAAAGCTCCATCAGCCTTCAGGAACTGGTGAGGCTGATTA GCGATGCGGTGGCTGAATTCGACGAGGAGTACGTGACGAGCCTGCAAGGGGAAGAAGGGCTGGAGAACATCTCGAGGAGCCTGGATTCTCTTCAGGAGAT GTTGGAGATGGAACCTGATGTTCTGGAAATAGGGAGCGTGTGCAATCTGGGGATGGACCAGATGGATTTTGGAGCAGGGGATCCGGGAATGGCGACAATA GGAGGTGTCAGGAAGGAGTTCAGCAACTTTGTGATCCTGGCGGAGGCCAGGCTTGGGAAAGGGATCGAAGCTTGGATGATCATTGAAGAAAGCAAGATGG GATTCCTGGAGAGAGATCCTGAGTTTCTCAAGTTTGCTGTCCCCATCACTAGCATCAAGATGTCCAAATTGTGA
AA sequence Show only first row Show all	>Lus10028814 pacid=23177317 polypeptide=Lus10028814 locus=Lus10028814.g ID=Lus10028814.BGIv1.0 annot-version=v1.0 MATNSFQVAITSRETIKPSSPTIHLNKPYSLSCFDQLVPSTYIPLLIFHSLANANFDISHVIEHAKFCLSETLNVFYPLSGRIQCNSSVGNFDSGIPFLT AKVTSPLSHFLDSHQHNGSYLNQLLPCRPFARELQEDIPLMAFQMNIFSCGGIALGCGMCHKIGDSATGLSFARTWAAFFSGSRRRIARPDFVKASSHFP SRSPMPEQYTSLIEKMWFKDTNFVTKRFFFNPESIASLRQESRDGSSLTLALPTTVEALSGFVWKCFISASRKAATLSGSPPKPSMLGLEVNLRKRCNPG QLEAAFGNLFWPATAVVGPEQSSISLQELVRLISDAVAEFDEEYVTSLQGEEGLENISRSLDSLQEMLEMEPDVLEIGSVCNLGMDQMDFGAGDPGMATI GGVRKEFSNFVILAEARLGKGIEAWMIIEESKMGFLERDPEFLKFAVPITSIKMSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10028814 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017468 [exp]	1.4	0.9901
AT3G06460			GNS1/SUR4 membrane protein fam...		Lus10020825 [exp]	2.0	0.9875
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10004770 [exp]	3.5	0.9251
AT3G10320			Glycosyltransferase family 61 ...		Lus10042043 [exp]	4.2	0.8788
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10011350 [exp]	5.3	0.8944
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10012685 [exp]	6.0	0.9176
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10011349 [exp]	10.4	0.8581
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026927 [exp]	14.4	0.8298
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003106 [exp]	14.7	0.8826
AT1G09930		ATOPT2	oligopeptide transporter 2 (.1...		Lus10010750 [exp]	16.1	0.9102

Compare expression of checked genes

Lus10028814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.