Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39170 173 / 2e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017465 [exp] 469 / 1e-169 AT2G39170 177 / 3e-55 unknown protein Lus10040608 [exp] 293 / 3e-100 AT2G39170 180 / 2e-56 unknown protein Lus10018298 [exp] 259 / 7e-87 AT2G39170 163 / 6e-50 unknown protein Lus10037961 [exp] 124 / 4e-35 AT2G39170 98 / 1e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227400 [exp] 224 / 1e-72 AT2G39170 214 / 2e-69 unknown protein Potri.008G035000 [exp] 221 / 3e-71 AT2G39170 196 / 1e-61 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10167 [flax] [poplar] BORCS8 BLOC-1-related complex sub-unit 8
Representative CDS sequence Show only first row Show all	>Lus10028816 pacid=23177306 polypeptide=Lus10028816 locus=Lus10028816.g ID=Lus10028816.BGIv1.0 annot-version=v1.0 ATGCACGGATTCTCCACTGTAGATGGATTCGTGGAGATAACCGAATGCATGGCCGAGATGATCAAGTACGTAGCCAACGAACCCTCCGTGGGGCTTTACT ACGTCCAGCGGCATGTGCAGAATGCAGGTCCGAACGTCATCAACATCAGGAAGAGCCTGATTGAGAGGTCCCGCGAAACAAGCTTGAACACCGAAGACAT GGAGGATTCCATCACCATGGTGAGATCAATGAAAGAATGCGGTCTCTCCATTGCTAACGAGATGATCAACGACATCAAGAAGTCTCTCCTGATAATGTCT GAGAAGCAGCAGCAGAAGGGAGGGTTGGTTTCTAATTCGTCGTCTGGGTTTTTCACGAGGCGGTCCAGCTCGACAGAGCTGCCTTCTGGAAGCGATACAA CCGACGAAACTGCTTCCCTTAACGATCTTGAGATTTCGGGTTACTATATCTCCACCATGTTCAAGACGGCCAAGGAGAAGGCCAGCAGTTTCAAGTGGCC GCAGATTAACTTGAAGGATACGTTGCCGAGTTTTAGTCCTTCTCAGTTCATTGCATCGACCAGTGGGACATACTCTGCTGCTGGTAAAGCTGAAGAACAG CTAGCTTCATCTTCATATCTGACAGCTGCAGAAGAGCTTGAAAGTGACACGAAAGATGAGCAACTGGGGATGAGCTCGAGCTCCTCCCCACATGGCAATG TAATTTCAGGGCTAGTAGATTATGATGTTTTCAAGGCTACTAGAGAAGCCAAGCTAGAGGAATGGCTGGTGGAGACTGCTGATAAATTGCGAGATAAATT GCCTCGAAGCAAATGA
AA sequence Show only first row Show all	>Lus10028816 pacid=23177306 polypeptide=Lus10028816 locus=Lus10028816.g ID=Lus10028816.BGIv1.0 annot-version=v1.0 MHGFSTVDGFVEITECMAEMIKYVANEPSVGLYYVQRHVQNAGPNVINIRKSLIERSRETSLNTEDMEDSITMVRSMKECGLSIANEMINDIKKSLLIMS EKQQQKGGLVSNSSSGFFTRRSSSTELPSGSDTTDETASLNDLEISGYYISTMFKTAKEKASSFKWPQINLKDTLPSFSPSQFIASTSGTYSAAGKAEEQ LASSSYLTAAEELESDTKDEQLGMSSSSSPHGNVISGLVDYDVFKATREAKLEEWLVETADKLRDKLPRSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39170			unknown protein		Lus10028816 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10012759 [exp]	4.0	0.8692
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	7.1	0.8756
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	8.7	0.8463
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031151 [exp]	10.4	0.8474
AT5G07960			unknown protein		Lus10021623 [exp]	17.3	0.8197
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	19.5	0.8458
AT1G14950			Polyketide cyclase/dehydrase a...		Lus10033397 [exp]	20.6	0.8080
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Lus10016055 [exp]	21.5	0.8188
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10000319 [exp]	21.7	0.7788
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10006059 [exp]	21.8	0.8325

Compare expression of checked genes

Lus10028816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.