Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10390 736 / 0 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT1G62830 481 / 4e-161 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G13682 447 / 4e-149 LDL2 LSD1-like2 (.1) AT4G16310 214 / 1e-59 LDL3 LSD1-like 3 (.1) AT2G43020 130 / 2e-32 ATPAO2 polyamine oxidase 2 (.1) AT1G65840 122 / 2e-29 ATPAO4 polyamine oxidase 4 (.1) AT3G59050 116 / 2e-27 ATPAO3 polyamine oxidase 3 (.1) AT5G13700 73 / 1e-13 ATPAO1, APAO polyamine oxidase 1 (.1) AT4G29720 64 / 2e-10 ATPAO5 polyamine oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017464 [exp] 1057 / 0 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10015996 [exp] 481 / 6e-162 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10012283 [exp] 479 / 5e-161 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10037885 [exp] 445 / 2e-148 AT3G13682 969 / 0.0 LSD1-like2 (.1) Lus10038587 [exp] 445 / 2e-148 AT3G13682 971 / 0.0 LSD1-like2 (.1) Lus10033928 [exp] 236 / 1e-66 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10024311 [exp] 233 / 9e-66 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10020726 [exp] 124 / 4e-30 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10029804 [exp] 121 / 3e-29 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035200 [exp] 853 / 0 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.010G227200 [exp] 847 / 0 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.002G013100 [exp] 495 / 2e-167 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.011G127600 [exp] 466 / 8e-157 AT3G13682 959 / 0.0 LSD1-like2 (.1) Potri.005G235400 [exp] 229 / 2e-64 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G027100 [exp] 228 / 4e-64 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.004G075800 [exp] 130 / 2e-32 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.002G055300 [exp] 129 / 6e-32 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.017G144001 [exp] 124 / 3e-30 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.005G207300 [exp] 122 / 1e-29 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10028817 pacid=23177166 polypeptide=Lus10028817 locus=Lus10028817.g ID=Lus10028817.BGIv1.0 annot-version=v1.0 ATGGACAGGAAAGTTGAGGCAGCTTTTAATCGGTTGCTGGATAAGGCAAGCAGGCTGAGGCAGCTGATGGGAGAGGTTTCTGTGGATGTATCAGTAGGAG CGGCTTTAGAGACATTTAGGCAGGTAGATGGGGATGCAGTGAACGAGGAGGAGATGAACTTATTCAATTGGCATTGTGCTAACTTGGAATATGCCAATGC AGGTTTGTTGTGTAAACTTTCACTAGCATTCTGGGACCAGGATGATCCGTATGATATGGGTGGGGATCACTGTTTTCTGCCCGGAGGAAATGGAGGGTTG GTTCAGGCTTTGGCCGAAAATGTCCCTATCTTGTATGAGAAGACTGTGCATACAATCAGGTATGGTGTTGATGGCGTGCAGGTTATTGCTGGGAGTCAGA CTTTTGAGGGTGATATGGTTTTGTGTACAGTTCCTCTTGGTGTTCTGAAGAGTGGTTCAGTAAAGTTCGTTCCAGAATTGCCACAGAGGAAGCTTGAAAG CATAAAGAGGATGGGCTATGGATTGTTGAATAAAGTCGCAATGCTTTTCCCATATGTATTTTGGGAAAGTGATCTCGATACGTTTGGTCATTTGACTGAC CAGTCAAGCAATCGAGGGGAGTTCTTTTTGTTCTACAGCTATTCCACCGTCTCTGGTGGACCACTATTACTTGCACTTGTAGCAGGCGAGGCTGCTCTGA AGTTTGAGAGTATGCCTCCGGTAGATGCTGTATCACACGTTCTTCAGATTCTGAAAGGTATATATGAACCATGTGGAATCATTGTCCCGGAGCCTATTCA AACTGTCTGTACAAGATGGGGTAGTGATTCTTTCTCTCTAGGATCTTATTCAAATGTAGCTGTTGGGGCATCTGGAGATGATTATGACATATTGGCGGAA AGTGTGGGGGATGGAAGACTGTTCTTTGCTGGGGAAGCCACCACTAGGCGGTATCCTGCAACTATGCATGGAGCTTTTCTAACGGGCTTAAGGGAAGCTG CTAATATTGCAAACCATGCTCATGCAAGAGCCTTAAAGATGAAGGTTAATCGTACTCCGTTTAAGAACTCCCATGCCTGTGCTTCACTTCTGATGGATTT ATTTAGAGAGCCAGATATAGAATTTGGTAGTTTTGCTGTTATTTTTCTTCGGAAGGATACTGATCCCAAGTCAACAGCAATTTTAAGGGTTGCTTTAAAT GAGCCTCATAAGAAGAGTCAAGGAAGTGCTTACCATGGTCAACAGCTTCGCAATAAGTTGTTATTTAAACAGCTTCAGTCACACTTCAATCAGCAACAAG AGCTTCATGTGTACACATTATTATCCAAACAACAGGCACTTGAGCTGAGAGAAGTCAGGGGAGGTGATGATGCTAGGCTGAATTATCTAGATGAAAAGTT AGGAGTAAAGTTAGTGGGGAGAAAGGGTTTAGGTCCTACGGCTGATTTACTTATTGCTTCCATTAAAGCTGAGAGGGGCAGTCGCAAGCCGACCTCTACT TCAACTCTGAAATCAGCAAATCCCAAGCTAAAAACGGGTACTTTGAAGCGGAAATTAATCAGGAGGGCTAAAATAGTAAGCAACAGCAAGATGGGACGTC CTCTCAATTCCAACATGGTAACAGGAGAAGTGTCGGTAGAAATGAAAACGGCGAATCAGGCTCCCCGCGAAATGTATGGTATAGGTTTGTACACAAATAA TATTTAG
AA sequence Show only first row Show all	>Lus10028817 pacid=23177166 polypeptide=Lus10028817 locus=Lus10028817.g ID=Lus10028817.BGIv1.0 annot-version=v1.0 MDRKVEAAFNRLLDKASRLRQLMGEVSVDVSVGAALETFRQVDGDAVNEEEMNLFNWHCANLEYANAGLLCKLSLAFWDQDDPYDMGGDHCFLPGGNGGL VQALAENVPILYEKTVHTIRYGVDGVQVIAGSQTFEGDMVLCTVPLGVLKSGSVKFVPELPQRKLESIKRMGYGLLNKVAMLFPYVFWESDLDTFGHLTD QSSNRGEFFLFYSYSTVSGGPLLLALVAGEAALKFESMPPVDAVSHVLQILKGIYEPCGIIVPEPIQTVCTRWGSDSFSLGSYSNVAVGASGDDYDILAE SVGDGRLFFAGEATTRRYPATMHGAFLTGLREAANIANHAHARALKMKVNRTPFKNSHACASLLMDLFREPDIEFGSFAVIFLRKDTDPKSTAILRVALN EPHKKSQGSAYHGQQLRNKLLFKQLQSHFNQQQELHVYTLLSKQQALELREVRGGDDARLNYLDEKLGVKLVGRKGLGPTADLLIASIKAERGSRKPTST STLKSANPKLKTGTLKRKLIRRAKIVSNSKMGRPLNSNMVTGEVSVEMKTANQAPREMYGIGLYTNNI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10028817 [exp]	0	1
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	11.0	0.7287
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10005669 [exp]	13.4	0.6911
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10039491 [exp]	15.8	0.7137
AT5G49840			ATP-dependent Clp protease (.1...		Lus10010691 [exp]	20.6	0.7112
AT1G60460			unknown protein		Lus10036440 [exp]	32.4	0.6465
AT1G09980			Putative serine esterase fami...		Lus10038351 [exp]	47.1	0.6954
					Lus10023643 [exp]	50.6	0.6910
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10016160 [exp]	55.3	0.6580
AT5G41770			crooked neck protein, putative...		Lus10034294 [exp]	60.8	0.6744
AT2G39805			Integral membrane Yip1 family ...		Lus10030159 [exp]	67.2	0.6567

Compare expression of checked genes

Lus10028817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.