Plant FIBer expression Database

Lus10028818 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017464
[exp]
224 / 3e-69 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G035200
[exp]
42 / 8e-05 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1)
PFAM info
Representative CDS sequence
>Lus10028818 pacid=23177118 polypeptide=Lus10028818 locus=Lus10028818.g ID=Lus10028818.BGIv1.0 annot-version=v1.0
ATGAATTCGGCTACTCCACCGGCGGACGATTTTTCTTCCCTTCCTCTGGAATTCATAACTTTCCCTCCTCTTCCTAGTCTTTGTTCCGATCTGACTCCGA
ATCCAACTCCATCCCCTATCCCAGCCTCAAGCTTCGACTCCGATGCATCTCCTAACCCTAATCAATTCCTATCATTCTCCGTCCCCAAGAAACGCCGCCG
TGGCCGGCCCACGCGCTCTGCCTCCGCTACTACTACCTCCTTTCAACTTTCTCAAATTCCCTTCTTAGCGCACAAGCATAGCAACGTTGGAATGGGGATT
AACCCTAATCCTAATCATAATTCCACATCGTTAACTTCGCAACAGGCGCAGGTTCCCGACATTGCAGAGGAGATAATCGTCATCAACAGGGAAGCCACCA
CAGAGGCGATAAATGCGCCTTTTGCTGGATTTCCCGCCGCCTCTTTTTTCTTCGAGGGGAGCGGTGACTGA
AA sequence
>Lus10028818 pacid=23177118 polypeptide=Lus10028818 locus=Lus10028818.g ID=Lus10028818.BGIv1.0 annot-version=v1.0
MNSATPPADDFSSLPLEFITFPPLPSLCSDLTPNPTPSPIPASSFDSDASPNPNQFLSFSVPKKRRRGRPTRSASATTTSFQLSQIPFLAHKHSNVGMGI
NPNPNHNSTSLTSQQAQVPDIAEEIIVINREATTEAINAPFAGFPAASFFFEGSGD

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G10390 FLD FLOWERING LOCUS D, Flavin cont... Lus10028818
[exp]
0 1
AT1G55350 EMB80, ATDEK1, ... EMBRYO DEFECTIVE 80, embryo de... Lus10010313
[exp]
14.0 0.8709
AT4G10920 KELP transcriptional coactivator p1... Lus10030245
[exp]
21.4 0.8352
AT1G55350 EMB80, ATDEK1, ... EMBRYO DEFECTIVE 80, embryo de... Lus10013411
[exp]
21.4 0.8696
AT4G38600 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KA... Lus10027841
[exp]
28.0 0.8536
AT4G31160 DCAF1 DDB1-CUL4 associated factor 1 ... Lus10006377
[exp]
30.1 0.8511
AT3G02130 TOAD2, RPK2, CL... TOADSTOOL 2, clv3 peptide inse... Lus10010087
[exp]
33.1 0.8483
AT4G34310 alpha/beta-Hydrolases superfam... Lus10042664
[exp]
37.3 0.8153
AT1G08420 BSL2 BRI1 suppressor 1 (BSU1)-like ... Lus10008369
[exp]
47.2 0.8431
AT5G22760 PHD finger family protein (.1) Lus10020532
[exp]
52.7 0.8422
AT1G79730 ELF7 EARLY FLOWERING 7, hydroxyprol... Lus10037558
[exp]
68.3 0.8213

Lus10028818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.