Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54840 354 / 3e-126 ARA6, AtRABF1, Ara-6, AtRab5C Ras-related small GTP-binding family protein (.1.2) AT4G19640 228 / 2e-76 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G45130 226 / 1e-75 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT4G39990 168 / 2e-52 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT1G09630 166 / 5e-52 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT1G16920 164 / 6e-51 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT5G65270 164 / 8e-51 AtRABA4a RAB GTPase homolog A4A (.1) AT5G10260 163 / 8e-51 AtRABH1e RAB GTPase homolog H1E (.1) AT4G18430 163 / 1e-50 AtRABA1e RAB GTPase homolog A1E (.1) AT2G22290 162 / 1e-50 ATRAB6, ATRAB-H1D, AtRABH1d ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, RAB GTPase homolog H1D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017462 [exp] 400 / 1e-141 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10038334 [exp] 227 / 9e-76 AT5G45130 349 / 3e-124 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10018285 [exp] 213 / 3e-70 AT5G45130 359 / 3e-128 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10040625 [exp] 209 / 5e-69 AT5G45130 355 / 6e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10034903 [exp] 205 / 3e-67 AT5G45130 258 / 2e-88 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10020746 [exp] 165 / 2e-51 AT1G06400 375 / 3e-134 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10035924 [exp] 165 / 4e-51 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10014336 [exp] 164 / 4e-51 AT5G10260 402 / 3e-145 RAB GTPase homolog H1E (.1) Lus10025738 [exp] 164 / 5e-51 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226300 [exp] 364 / 3e-130 AT3G54840 373 / 7e-134 Ras-related small GTP-binding family protein (.1.2) Potri.008G035800 [exp] 361 / 7e-129 AT3G54840 367 / 3e-131 Ras-related small GTP-binding family protein (.1.2) Potri.018G079300 [exp] 221 / 1e-73 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.012G117800 [exp] 219 / 6e-73 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.003G054900 [exp] 217 / 5e-72 AT4G19640 270 / 4e-93 ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) Potri.015G113000 [exp] 216 / 1e-71 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.003G004100 [exp] 167 / 2e-52 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.001G270100 [exp] 164 / 4e-51 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.007G096000 [exp] 164 / 5e-51 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.019G092500 [exp] 163 / 2e-50 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10028820 pacid=23177184 polypeptide=Lus10028820 locus=Lus10028820.g ID=Lus10028820.BGIv1.0 annot-version=v1.0 ATGGGTTGTGCTTCTTCTCTCCCAGATCGGAGTCCTGGGTCGTTGAGTGGACTAAATCCTGATTCCAGCGGGAAATCTGATGCAAACTGCCTTCGTGCAA AGCTAGTTCTATTAGGTGATTCTGGTGTGGGTAAAAGCTGCATTGTCCTTCGATTCGTTAGAGATCAATTTGATCCAACATCTAAGGTAACTATTGGAGC CTCTTTTTTGTCACAAACATTAGCCCTCCAGGATTCCACAACAGTAAAGTTTGAGATATGGGATACTGCTGGACAAGAGAGGTACGCTGCATTGGCACCG CTCTACTATCGGGGTGCTGCAGTTGCTGTTATTGTCTATGATATAACAAGCCCGGAGTCCTTCAGGAAAGCACAGTATTGGGTTAAGGAACTTCAGAAAC ATGGGAGTCCTGATATAGTGTTGGCTTTAGTTGGTAATAAGGCTGATCTTCATGAGAAGCGGGAAGTGCCTACTCAAGATGGCATTGACTATGCTGAGAA GAACGGAATGTTCTTCATTGAGGCATCTGCCAAGACAGCAGACAATATCAAACAGCTCTTTGAGGAGATTGCGAAGCGGCTGCCTCGCCCAGTTCCGGAG CAAATACCTTCGAGATGA
AA sequence Show only first row Show all	>Lus10028820 pacid=23177184 polypeptide=Lus10028820 locus=Lus10028820.g ID=Lus10028820.BGIv1.0 annot-version=v1.0 MGCASSLPDRSPGSLSGLNPDSSGKSDANCLRAKLVLLGDSGVGKSCIVLRFVRDQFDPTSKVTIGASFLSQTLALQDSTTVKFEIWDTAGQERYAALAP LYYRGAAVAVIVYDITSPESFRKAQYWVKELQKHGSPDIVLALVGNKADLHEKREVPTQDGIDYAEKNGMFFIEASAKTADNIKQLFEEIAKRLPRPVPE QIPSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	0	1
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	2.0	0.8628
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	2.0	0.8751
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10039114 [exp]	2.4	0.8359
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	3.5	0.8597
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	6.3	0.8496
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	6.3	0.8526
AT3G52560		MMZ4 ,UEV1D ,UE...	MMS2 ZWEI HOMOLOGUE 4, ubiquit...		Lus10029415 [exp]	7.5	0.8311
AT2G42780			unknown protein		Lus10010947 [exp]	7.5	0.8251
AT4G26470			Calcium-binding EF-hand family...		Lus10008357 [exp]	8.8	0.8314
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10005088 [exp]	11.4	0.8268

Compare expression of checked genes

Lus10028820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.