Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01360 241 / 3e-78 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) AT5G19870 52 / 2e-07 Family of unknown function (DUF716) (.1) AT1G55230 49 / 2e-06 Family of unknown function (DUF716) (.1) AT1G32120 44 / 8e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017462 [exp] 312 / 2e-105 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10013105 [exp] 125 / 1e-35 AT3G01360 53 / 6e-09 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Lus10039191 [exp] 64 / 3e-11 AT1G55230 391 / 1e-137 Family of unknown function (DUF716) (.1) Lus10013749 [exp] 57 / 7e-09 AT1G55230 386 / 1e-135 Family of unknown function (DUF716) (.1) Lus10023842 [exp] 44 / 7e-05 AT1G49470 275 / 6e-92 Family of unknown function (DUF716) (.1) Lus10011779 [exp] 43 / 0.0001 AT1G32120 69 / 9e-13 unknown protein Lus10014806 [exp] 42 / 0.0003 AT1G32120 424 / 1e-140 unknown protein Lus10038547 [exp] 42 / 0.0003 AT1G32120 429 / 3e-142 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G122800 [exp] 292 / 3e-98 AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Potri.003G216600 [exp] 61 / 2e-10 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1) Potri.001G009000 [exp] 60 / 4e-10 AT1G55230 364 / 7e-127 Family of unknown function (DUF716) (.1) Potri.001G008900 [exp] 54 / 4e-08 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.003G216500 [exp] 46 / 1e-05 AT1G55230 383 / 3e-134 Family of unknown function (DUF716) (.1) Potri.009G108900 [exp] 43 / 0.0001 AT1G49470 308 / 5e-105 Family of unknown function (DUF716) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [flax] [poplar] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Lus10028821 pacid=23177286 polypeptide=Lus10028821 locus=Lus10028821.g ID=Lus10028821.BGIv1.0 annot-version=v1.0 ATGGGCCTCTTCTCCTTCACCTTAGCAGGTGCAGGATTCATCCTCATCGGCGCATGGGAATCTCTTCGATCTTCCTCCACTTCAAATCAATCTCCCGAAC CTTCAACCTCTAACCAAACTTCTCCTTCTTCTTCCTCCTTGACGTACGCAGCGGTTTGCATCTTCTCCTTCCTTTTCATCGCCGACTCTCTCGTTTCCCT ATTCAACGCAGTTGACTCCAACGACGGTATCGGCTCCGCCCTCCAGTTACAGATTCTCTCCATCGCTGCCGTTTTCTTTTTCTACTCCGTCCTCGGTTTG GCCACGAACCTCTCCTTGACCCCGATCCGTTTCCCTACGAAGCTCCTAGATTTGATCCTCCTCTTCGGTTTCCTGGAAGAATTTCTGCTCTACTACTTGC AGAAGAAAGACACCACCGGAATTGAGAACAGGTACTTCGACCTTATGCTGGTCCCCATTTCGATTTGCTTGGTTTCCACTCTGCTTGAATTGAAATCCGG AGCAGAAGATGAGTCGTCGAATTACTACTACCCCAGATTGGCTCGCGGGGTTGGTTTGATTTTGCAAGGGACGTGGTTTGTTCAAATGGGGATTTCGTTT TACTCCATTCTTATTGTTCAGGGCTGCACTCTGAGGGCTAGAAGTAGAGGCAACTATACTATAACCTGTAAAGGCCATCATGAGATTCACAGGGCTAATG GGATTGCTACTCTTCAGTTCAATTGCCATCTAGCATTGCTTGTGCTTTTGGCTTCTGCTTTCTACTCCACTACTATAGTCAGCAAGGCTGGTTCAGAAAG GCAGTATAACCCTGTAGGACTGGAGATGGTGGAGAATGGTGGAAGGTTCACTCTTGACTCAGATGAAGATGAGATTAGAGAAGAGAAAGCAGGAGTACTT AATGGTTATGGTTCTCATGAATGA
AA sequence Show only first row Show all	>Lus10028821 pacid=23177286 polypeptide=Lus10028821 locus=Lus10028821.g ID=Lus10028821.BGIv1.0 annot-version=v1.0 MGLFSFTLAGAGFILIGAWESLRSSSTSNQSPEPSTSNQTSPSSSSLTYAAVCIFSFLFIADSLVSLFNAVDSNDGIGSALQLQILSIAAVFFFYSVLGL ATNLSLTPIRFPTKLLDLILLFGFLEEFLLYYLQKKDTTGIENRYFDLMLVPISICLVSTLLELKSGAEDESSNYYYPRLARGVGLILQGTWFVQMGISF YSILIVQGCTLRARSRGNYTITCKGHHEIHRANGIATLQFNCHLALLVLLASAFYSTTIVSKAGSERQYNPVGLEMVENGGRFTLDSDEDEIREEKAGVL NGYGSHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01360			Family of unknown function (DU...		Lus10028821 [exp]	0	1
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10041000 [exp]	2.8	0.9623
AT2G02870			Galactose oxidase/kelch repeat...		Lus10037196 [exp]	8.9	0.9325
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10018695 [exp]	10.0	0.9569
AT1G03220			Eukaryotic aspartyl protease f...		Lus10036343 [exp]	16.1	0.9461
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10006617 [exp]	17.3	0.9317
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Lus10036023 [exp]	19.4	0.9322
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	19.6	0.9426
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	19.9	0.9544
AT1G03910			unknown protein		Lus10021530 [exp]	20.2	0.9400
AT4G10790			UBX domain-containing protein ...		Lus10017317 [exp]	20.4	0.9100

Compare expression of checked genes

Lus10028821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.