Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11400 385 / 2e-135 ATEIF3G1, EIF3G1 eukaryotic translation initiation factor 3G1 (.1.2) AT5G06000 319 / 3e-109 ATEIF3G2, EIF3G2 ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITIATION FACTOR 3G2, eukaryotic translation initiation factor 3G2 (.1) AT3G23830 59 / 7e-11 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G34110 62 / 1e-10 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G21440 61 / 5e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G14100 59 / 9e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 59 / 1e-09 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G55310 57 / 2e-09 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT3G46020 54 / 3e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 57 / 4e-09 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017459 [exp] 466 / 9e-168 AT3G11400 447 / 3e-160 eukaryotic translation initiation factor 3G1 (.1.2) Lus10030482 [exp] 465 / 4e-167 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10012833 [exp] 342 / 7e-119 AT3G11400 345 / 3e-120 eukaryotic translation initiation factor 3G1 (.1.2) Lus10023758 [exp] 62 / 1e-11 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022551 [exp] 61 / 3e-11 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 60 / 4e-11 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10003980 [exp] 60 / 5e-11 AT2G37510 169 / 1e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010370 [exp] 61 / 3e-10 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10014802 [exp] 61 / 3e-10 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060000 [exp] 419 / 6e-149 AT3G11400 422 / 5e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.010G199000 [exp] 411 / 7e-146 AT3G11400 422 / 4e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.002G062700 [exp] 64 / 4e-11 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.005G198500 [exp] 62 / 9e-11 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.001G207100 [exp] 60 / 1e-10 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.009G120900 [exp] 62 / 2e-10 AT2G21440 750 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G304000 [exp] 61 / 2e-10 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.011G130300 [exp] 59 / 2e-10 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 57 / 7e-10 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G061600 [exp] 58 / 9e-10 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0511 [flax] [poplar] Retroviral_zf PF12353 [flax] [poplar] eIF3g Eukaryotic translation initiation factor 3 subunit G
Representative CDS sequence Show only first row Show all	>Lus10028823 pacid=23177291 polypeptide=Lus10028823 locus=Lus10028823.g ID=Lus10028823.BGIv1.0 annot-version=v1.0 ATGACGGTCGATACAGCTGCTCCGAGCAAGCTCCGATGGGGGGAATTGGAGGATGACGGCGAGGATCTGGATTTTCTCTTGCCGCCTAAGGAGGTCATTG GACCCGATGAGAACGGGATAAAGAGAGTGATTGAATACAAATTTAACGATGATGGTAGCAAGGTTAAGATTACGACCACCACTCGTGTGAGGAAGCTGGC CAAGGCCCGACTCAGTCGACGTGCAGTGGAGCGTAGAAATTGGGCCAAGTTCGGCGACGCCGTTCGTGAGGACGTTGGGGCTCGACTTACCATGGTTTCT ACCGAGGAGATCTTGCTTGAACGGCCTAGGGCTCCAGGCACCAAAGCAGAAGAAAACAAAATGGGCGGTGATAACTTGTCTCAGCTCGGCAAAGCTGGAG CAGTACTTATGCTTTGCAGAACCTGTGGTAAGAAGGGAGATCACTGGACATCAAGGTGTCCATACAAGGATCTCGCTGCTCCAACCGAATCATTCGTGGA TAAACCCCCAACATCCGACGCTGGTGCTGCTCCTGGAGGAGCTGGCAAGGCTGCTTATGTTCCGCCGAGCATGAGGGCAGGAGCAGAGAGAAGTGTCGGA TCAGATATGAGGAGAAGGAACGATGAGAACTCGGTTCGTGTCACCAACCTGTCGGAGGACACTCGCGAGCAAGACCTGAAGGAGCTGTTCCAACCGCTCG GTCATGTAACCCGTACTTATGTTGCAATCGATCAGAAGACAGGTGTGAGCCGAGGCTTTGGTTTCGTCAACTTTTCTAACAAAGAGGATGCAGAGGGGGC GATACGCAAGCTGAACGGGTATGGTTACGACAATCTAATCCTTCGTGTCGAGTGGGCTACTCCTCGAGCCAACTAG
AA sequence Show only first row Show all	>Lus10028823 pacid=23177291 polypeptide=Lus10028823 locus=Lus10028823.g ID=Lus10028823.BGIv1.0 annot-version=v1.0 MTVDTAAPSKLRWGELEDDGEDLDFLLPPKEVIGPDENGIKRVIEYKFNDDGSKVKITTTTRVRKLAKARLSRRAVERRNWAKFGDAVREDVGARLTMVS TEEILLERPRAPGTKAEENKMGGDNLSQLGKAGAVLMLCRTCGKKGDHWTSRCPYKDLAAPTESFVDKPPTSDAGAAPGGAGKAAYVPPSMRAGAERSVG SDMRRRNDENSVRVTNLSEDTREQDLKELFQPLGHVTRTYVAIDQKTGVSRGFGFVNFSNKEDAEGAIRKLNGYGYDNLILRVEWATPRAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10028823 [exp]	0	1
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031196 [exp]	1.7	0.9152
AT4G10790			UBX domain-containing protein ...		Lus10017317 [exp]	2.0	0.9109
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Lus10004607 [exp]	5.5	0.8884
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	9.6	0.8950
AT5G06280			unknown protein		Lus10016973 [exp]	11.1	0.8699
AT1G71840			transducin family protein / WD...		Lus10031629 [exp]	12.6	0.8930
AT3G58030			RING/U-box superfamily protein...		Lus10021063 [exp]	13.2	0.8731
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10010354 [exp]	14.1	0.8619
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10008417 [exp]	15.2	0.8743
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10008963 [exp]	15.5	0.8782

Compare expression of checked genes

Lus10028823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.