Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04410 360 / 4e-118 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G10500 347 / 5e-113 NAC ANAC053 NAC domain containing protein 53 (.1) AT3G10490 254 / 3e-81 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT3G10480 257 / 1e-79 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT5G09330 235 / 8e-71 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) AT1G34190 225 / 2e-66 NAC ANAC017 NAC domain containing protein 17 (.1) AT5G64060 218 / 4e-66 NAC ANAC103 NAC domain containing protein 103 (.1) AT1G34180 221 / 9e-65 NAC ANAC016 NAC domain containing protein 16 (.1.2) AT1G65910 207 / 3e-59 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G17730 196 / 4e-59 NAC ANAC057 NAC domain containing protein 57 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017458 [exp] 857 / 0 AT5G04410 379 / 8e-126 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10037939 [exp] 265 / 3e-83 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10023537 [exp] 254 / 5e-79 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10038670 [exp] 265 / 2e-77 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10028713 [exp] 219 / 4e-64 AT1G34190 392 / 2e-130 NAC domain containing protein 17 (.1) Lus10020896 [exp] 214 / 5e-64 AT5G09330 276 / 2e-88 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Lus10042284 [exp] 199 / 2e-59 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 199 / 3e-59 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 207 / 7e-59 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G031800 [exp] 462 / 8e-158 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229900 [exp] 455 / 2e-155 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229700 [exp] 266 / 3e-83 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.007G109100 [exp] 224 / 3e-67 AT5G09330 265 / 6e-84 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Potri.002G061300 [exp] 224 / 1e-65 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.005G058900 [exp] 213 / 2e-63 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.017G139500 [exp] 216 / 4e-62 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.005G200100 [exp] 213 / 8e-62 AT1G34190 447 / 2e-151 NAC domain containing protein 17 (.1) Potri.004G081000 [exp] 211 / 3e-60 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.008G081500 [exp] 199 / 5e-59 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10028824 pacid=23177181 polypeptide=Lus10028824 locus=Lus10028824.g ID=Lus10028824.BGIv1.0 annot-version=v1.0 ATGGCCCGTGGAGACTCGGAAGCTTTTCTCGGACCTGGTTTCCGATTCCACCCCACCGACGAGGAACTGCTACGCTATTACCTCAAGCGGAAGGTCACTA ACAAGCCCCTTCGCTTTGACCCCATTTCCGTCGTCGATGTTTACAGATCGGAGCCCTGGGATCTTCCTGTTCGTGCCAAGTTGAAGAGCAGGGACTTGGA GTGGTACTTTTTCAGCTTGTTGGATAGGAAGTATGGAAATGGATCCAAGACCAATCGAGCTACGGAGAAAGGATACTGGAAAACAACTGGGAAAGACAGG CCTATTCGCTCCAACTTGGTCACTGTTGGGATGAAGAAAACTCTAGTCTACCACCTCGGGCGAGCTCCGCGTGGTGAGCGTTCAAATTGGGTAATGCATG AGTACCGCCTTTCCGAGGAGGAATTGGAGAAGTTTGGAGTTGGCCAAGATACTTATGTCCTATGTAGAATCTTTCAAAAGAGCGGAACTGGACCAAAGAA TGGAGAACAGTATGGAGCTCCGTTCGTCGAGGAAGAATGGGAAGATGAGGATGTCCCTCTCCTACCTGGTGAAAATGCTGTTGTTACTGATGGTTTGGAT GAATTTTACGGTGAATATCTCGACGCAGTGGACTTTGATCAGAAACTTGAAGTGGGGGATGAGAGAGCGACTGCTGCTGTTCCAGTAGCCACTTACTATG AAGAGACTAAAAACTATGTAGACCATGGTGGGAGCTCCAGTGAAGATGGTTCAAACCCTCTGATAGATGGCGCTCTAGTTACTGTTGCAGTGCCTGTTGA TCAACAGTTACCTTACGCTCAAAATGAGGAGGTGGATAACAACTGTGAAGAAGTAAATTATGTTGGAAGTTCAACCAAGGACTTGAGTCTTCCCAAAATC GAGGATATGGTTGATAGTTCTTTTGTGGATGCTGGTGGAAGTTCTCAATTTGCTGATGGGCTTTCCTTAGAAGCATTCGAACTTCAAGACAATATGGAGC CAGGGTCTTGCTTAGAAGACCCTACAGATTTTAACTTGGAGGAATACTTGGATTTCGATGACATGTCCTTTGATCCTTTCGATCCAATGGAGAATGATGC TTCCATTTACGATCCGTCACCTGAATCCAACAAGGATTTGAATGGAGGAGTTGATAATGCTGACATAAGAAGTGAGAATCTTCCGAGCATGGGTGGTCAT GCATCGTCCTCTGAGCAAAAAACTGATGCTATGATACCAAAGTTCTACCCAATGAAATCAGATTTCGCTTCAAACTATCCATTTATTGGGAAAGCGAGCA AGATGCTGGGTGATATACCAGCACCACCTGCTTATGCTGCAGAGTCCCCTGTGAAGGGAGCTGCTCTTCATTTCGCTTCAGCACAGGAAGCTTCGAGCTC GATTCGCGTCACTGCTGGTATGATAAGAATAGAGGACATGGGCGTAAGAGGAAATGAGATGATGTTTGGTAAAAGCATGGGAGTCAACGTCGTGATGTCG ATTACTTGGCCACAAGGCTTTGTCGAATACACTGCTGATCCACCAAGGAGGATTATGGGTCTTGTGCAGCATTGTAACTGTTACATGAACAGCAGGCTTA TGACGGCGATCGAGGAGCGATTTCGATGCGAAGCAAGGGACAGCTAA
AA sequence Show only first row Show all	>Lus10028824 pacid=23177181 polypeptide=Lus10028824 locus=Lus10028824.g ID=Lus10028824.BGIv1.0 annot-version=v1.0 MARGDSEAFLGPGFRFHPTDEELLRYYLKRKVTNKPLRFDPISVVDVYRSEPWDLPVRAKLKSRDLEWYFFSLLDRKYGNGSKTNRATEKGYWKTTGKDR PIRSNLVTVGMKKTLVYHLGRAPRGERSNWVMHEYRLSEEELEKFGVGQDTYVLCRIFQKSGTGPKNGEQYGAPFVEEEWEDEDVPLLPGENAVVTDGLD EFYGEYLDAVDFDQKLEVGDERATAAVPVATYYEETKNYVDHGGSSSEDGSNPLIDGALVTVAVPVDQQLPYAQNEEVDNNCEEVNYVGSSTKDLSLPKI EDMVDSSFVDAGGSSQFADGLSLEAFELQDNMEPGSCLEDPTDFNLEEYLDFDDMSFDPFDPMENDASIYDPSPESNKDLNGGVDNADIRSENLPSMGGH ASSSEQKTDAMIPKFYPMKSDFASNYPFIGKASKMLGDIPAPPAYAAESPVKGAALHFASAQEASSSIRVTAGMIRIEDMGVRGNEMMFGKSMGVNVVMS ITWPQGFVEYTADPPRRIMGLVQHCNCYMNSRLMTAIEERFRCEARDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10028824 [exp]	0	1
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	2.8	0.8521
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	2.8	0.8583
AT3G05500			Rubber elongation factor prote...		Lus10015171 [exp]	3.9	0.8365
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10015786 [exp]	5.3	0.8262
AT3G06170			Serinc-domain containing serin...		Lus10004430 [exp]	10.2	0.8164
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	12.6	0.7962
AT4G02425			unknown protein		Lus10030370 [exp]	14.9	0.8055
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	16.4	0.8125
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10015096 [exp]	18.4	0.7057
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10036873 [exp]	19.1	0.8198

Compare expression of checked genes

Lus10028824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.