Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04420 611 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT5G27630 435 / 2e-146 ACBP5 acyl-CoA binding protein 5 (.1) AT3G05420 435 / 3e-146 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G18590 196 / 1e-54 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G18610 127 / 2e-31 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 117 / 9e-28 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G68050 92 / 2e-19 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT5G57360 87 / 6e-18 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G36360 84 / 4e-17 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT2G18915 82 / 3e-16 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017457 [exp] 949 / 0 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037933 [exp] 764 / 0 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10038666 [exp] 761 / 0 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10029902 [exp] 442 / 6e-149 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 427 / 4e-143 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 426 / 2e-142 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 417 / 3e-139 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10034163 [exp] 187 / 1e-51 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 174 / 1e-46 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G031200 [exp] 693 / 0 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 677 / 0 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.013G018800 [exp] 427 / 4e-143 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.005G026900 [exp] 424 / 4e-142 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G214900 [exp] 212 / 9e-61 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 207 / 7e-59 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G030901 [exp] 153 / 4e-44 AT5G04420 120 / 1e-32 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G013000 [exp] 142 / 5e-36 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 137 / 2e-34 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 117 / 5e-28 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10028825 pacid=23177294 polypeptide=Lus10028825 locus=Lus10028825.g ID=Lus10028825.BGIv1.0 annot-version=v1.0 ATGGGATTTGGGGAGATTAGAGGCGCAGATGTCGGTGATTGGTTTTCACAATTGCCATATGAAGAGTGGGGGGTAATTCCTGTTTTTGGTCCCCGACCAT CAGCTCGCTTCAAGCATGCCGCTGCCTTTGCTGATGATAGGTTATATGTCTATGGTGGAAGTCGTAATGGTCGTTACCTATCTGATATACAGGCTTTTGA TTTTGGAAATTTGGCATGGTATAGCCTTAGACCGAAATATGAGTTGAATGGACCATCTAAAGTTGAGGAGAGTGGATCTCAAGAAATTCTTCCAGCCACG TCAGACCACAGCATGGTCAAGTGGGGAAACCAACTGCTGCTACTTGGTGGACATGCCAAAAACTCTTCTAATAGCATGATAGTTCACTTCATTGATCTAG AAACACAACGCTGTAGTATGCCAGAAACCTCTGGAAAATCTCCGTCAGCACGAGGGGGCTATTCTGCCACTCTTGTTGGTTCCAGGCTGGTGATTTTTGG TGGAGAGGATCAGAATAGGAAGCTGCTTAATGACATTCATACCCTCAATCTTGAAACACTGACGTGGGAGTTGGTGCAAACAATGCAGACACCTCCATCT CCGCGATTTGACCACACAGCTACAGTACATGCAGGGCGATACCTTCTTGTATTTGGCGGTTGTTCTCACTCAATCTTCTTCAGTGATCTTCACGTGCTTG ACCTACAGACAATGGAGTGGACCCAACCAGAGATTCGAGGGGATTTGGTGAATCCTAGGGCTGGTCATGCTAGTATAACCATCGACGAGAACTGGTATAT CGTTGGTGGTGGAGATAATAAAAATGGTTCTCTAGAGACGCTTGAATTAAATATGTCCAAGCTGGCCTGGTCAACATTGACAAGTGTAAAGGAAAGACAT CCACTTGCCAGTGAGGGACTAAGTGTTTCCTCAGCATTGATCAAAGGAGAGAAGTACTTGGTTGCTTTTGGTGGCTATAATGGGAAGTATACTAATGAGG TCTTTGTTATGCGACTGAAACCTAGAAACACTCTGCAACCGAAGATTTACAAGTCACCAGCAGCAGCCGCTGCAGCTGCTTCCGTTTCAGCTGCATATGC CTTGTCTAAACCTGAGAAGTTGGATGTATATAGCAAAGAAGTTAGTTATGGAGAAATGAAAGATGAAAGACGTTATCAGGAAGATCTCACCATAGAAATT GATACAATAAAGGAAGAGAAAAAGATGCTGGAAGTGTCACTAGCAGATGTCAGCGCAGAGAAATCTAGTCTCCGAGAAAAGATCGATGAAGTGAACTCTA CTCATGCTGATCTATCCAAGGAACTCCATTCTGTCCAAAGTCAATTGGTGACTGAAAGATCTAGATGCTTCAAGCTTGAGGCACAGATAGCTGAGCTGCA GAAGGCACTGGAATCACTGGAGACGATAGAGAACGAAGTCCAACTACTTCGGAGGCAGAAATCTGCTTTGGAGAAAGAGACAGAGATGAACAATGCTGCC AGTCAAAGCGAAAGGCAGAGCTCCGGTGGAGCGTGGCGTTGGATAGCTGGGTGA
AA sequence Show only first row Show all	>Lus10028825 pacid=23177294 polypeptide=Lus10028825 locus=Lus10028825.g ID=Lus10028825.BGIv1.0 annot-version=v1.0 MGFGEIRGADVGDWFSQLPYEEWGVIPVFGPRPSARFKHAAAFADDRLYVYGGSRNGRYLSDIQAFDFGNLAWYSLRPKYELNGPSKVEESGSQEILPAT SDHSMVKWGNQLLLLGGHAKNSSNSMIVHFIDLETQRCSMPETSGKSPSARGGYSATLVGSRLVIFGGEDQNRKLLNDIHTLNLETLTWELVQTMQTPPS PRFDHTATVHAGRYLLVFGGCSHSIFFSDLHVLDLQTMEWTQPEIRGDLVNPRAGHASITIDENWYIVGGGDNKNGSLETLELNMSKLAWSTLTSVKERH PLASEGLSVSSALIKGEKYLVAFGGYNGKYTNEVFVMRLKPRNTLQPKIYKSPAAAAAAASVSAAYALSKPEKLDVYSKEVSYGEMKDERRYQEDLTIEI DTIKEEKKMLEVSLADVSAEKSSLREKIDEVNSTHADLSKELHSVQSQLVTERSRCFKLEAQIAELQKALESLETIENEVQLLRRQKSALEKETEMNNAA SQSERQSSGGAWRWIAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	0	1
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10041506 [exp]	2.0	0.8609
AT5G04420			Galactose oxidase/kelch repeat...		Lus10017457 [exp]	2.0	0.8679
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	4.7	0.8714
AT1G18160			Protein kinase superfamily pro...		Lus10027247 [exp]	7.7	0.8464
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10034513 [exp]	9.5	0.8646
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10024966 [exp]	9.8	0.8432
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10042096 [exp]	13.3	0.7792
AT1G18160			Protein kinase superfamily pro...		Lus10038955 [exp]	13.8	0.8076
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10025664 [exp]	14.0	0.7989
AT4G13150			unknown protein		Lus10038175 [exp]	14.8	0.8270

Compare expression of checked genes

Lus10028825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.