Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59910 181 / 2e-58 HTB4 Histone superfamily protein (.1) AT1G07790 179 / 8e-58 HTB1 Histone superfamily protein (.1) AT3G45980 179 / 1e-57 H2B, HTB9 HISTONE H2B, Histone superfamily protein (.1) AT3G46030 179 / 2e-57 HTB11 Histone superfamily protein (.1) AT2G28720 178 / 5e-57 Histone superfamily protein (.1) AT5G02570 177 / 5e-57 Histone superfamily protein (.1) AT2G37470 176 / 1e-56 Histone superfamily protein (.1) AT3G53650 174 / 6e-56 Histone superfamily protein (.1) AT5G22880 174 / 1e-55 HTB2, H2B HISTONE H2B, histone B2 (.1) AT3G09480 158 / 1e-49 Histone superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017456 [exp] 190 / 6e-62 AT2G28720 226 / 1e-77 Histone superfamily protein (.1) Lus10040855 [exp] 183 / 3e-59 AT3G45980 247 / 2e-85 HISTONE H2B, Histone superfamily protein (.1) Lus10005897 [exp] 181 / 2e-58 AT3G45980 244 / 1e-84 HISTONE H2B, Histone superfamily protein (.1) Lus10005893 [exp] 181 / 2e-58 AT3G45980 234 / 8e-81 HISTONE H2B, Histone superfamily protein (.1) Lus10037371 [exp] 180 / 8e-58 AT3G45980 233 / 3e-80 HISTONE H2B, Histone superfamily protein (.1) Lus10016156 [exp] 179 / 9e-58 AT3G45980 231 / 1e-79 HISTONE H2B, Histone superfamily protein (.1) Lus10041347 [exp] 179 / 1e-57 AT3G45980 226 / 3e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10013544 [exp] 179 / 2e-57 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10017292 [exp] 179 / 2e-57 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G230701 [exp] 188 / 5e-61 AT5G59910 191 / 3e-63 Histone superfamily protein (.1) Potri.008G030400 [exp] 185 / 8e-60 AT5G59910 191 / 2e-63 Histone superfamily protein (.1) Potri.008G030500 [exp] 182 / 7e-59 AT5G59910 190 / 4e-63 Histone superfamily protein (.1) Potri.010G231300 [exp] 182 / 9e-59 AT1G07790 177 / 3e-58 Histone superfamily protein (.1) Potri.008G029900 [exp] 182 / 9e-59 AT1G07790 177 / 3e-58 Histone superfamily protein (.1) Potri.010G230600 [exp] 181 / 1e-58 AT1G07790 205 / 3e-69 Histone superfamily protein (.1) Potri.010G230801 [exp] 181 / 1e-58 AT1G07790 205 / 2e-69 Histone superfamily protein (.1) Potri.017G123700 [exp] 181 / 2e-58 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.009G028001 [exp] 181 / 4e-58 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.004G091200 [exp] 180 / 5e-58 AT5G02570 188 / 2e-62 Histone superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Lus10028826 pacid=23177194 polypeptide=Lus10028826 locus=Lus10028826.g ID=Lus10028826.BGIv1.0 annot-version=v1.0 ATGGCCCCCAAGGCAGAGAAGAAGCCAGCAGAGAAGAAGCCGGCAGAGAAGTCTCCGGCCGCAGCCGAGAAGAAGCCACGCGCCGAAAAGAAGTTGCCGA AAGACGGAGGCTCCATCGACAAGAAGAAGAAGAAGGCCAAGAAGAGCGTTGAGACCTACAAGATCTACATCTTCAAGGTCCTGAAGCAGGTCCACCCAGA CATCGGGATCTCCAGCAAGGCCATGGGGATTATGAACAGCTTCATCAACGATATCTTCGAGAAGCTCGCCCAGGAGTCTTCCAGGCTCGCCAGGTACAAC AAGAAGCCCACCATCACGTCGAGGGAGATCCAGACTGCTGTCAGGCTTGTTCTCCCTGGAGAGCTCGCTAAGCACGCTGTCTCCGAAGGAACGAAGGCTG TTACCAACAACTTACCTATTGTTGATCGAGTTATGTTATCTTCATCCCCAGTCTCTCAGTTTGTCTTTACTGGCTTGACGGTGTTACCAATTACTGTTTG CAATTGCTCTGAGTCCTTCATCTTGGCTTTCTTATTGTCGAGTGGGAAATTTGGAATTTCGACAGATTTCAGTCTGGTAGGTTTAATCAGCTTCTGCTTG GTCACTCTTATTGGTATTCGAAATCCTGGGGTTAAGGTGAAGCTGATTGAATTGCCAACATTATGCAGTTAG
AA sequence Show only first row Show all	>Lus10028826 pacid=23177194 polypeptide=Lus10028826 locus=Lus10028826.g ID=Lus10028826.BGIv1.0 annot-version=v1.0 MAPKAEKKPAEKKPAEKSPAAAEKKPRAEKKLPKDGGSIDKKKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYN KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTNNLPIVDRVMLSSSPVSQFVFTGLTVLPITVCNCSESFILAFLLSSGKFGISTDFSLVGLISFCL VTLIGIRNPGVKVKLIELPTLCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28720			Histone superfamily protein (....		Lus10028826 [exp]	0	1
AT1G20580			Small nuclear ribonucleoprotei...		Lus10016013 [exp]	1.0	0.9217
AT1G27435			unknown protein		Lus10035173 [exp]	2.4	0.9034
AT5G49100			unknown protein		Lus10037496 [exp]	9.8	0.8956
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	11.7	0.9093
AT5G54970			unknown protein		Lus10032643 [exp]	13.0	0.9124
AT2G15270			unknown protein		Lus10002814 [exp]	13.4	0.8926
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020232 [exp]	17.3	0.8973
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10039636 [exp]	18.6	0.9037
AT1G01910			P-loop containing nucleoside t...		Lus10041377 [exp]	19.1	0.8848
AT5G41760			Nucleotide-sugar transporter f...		Lus10037204 [exp]	20.1	0.8928

Compare expression of checked genes

Lus10028826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.