Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04460 705 / 0 RING/U-box superfamily protein (.1.2.3) AT2G27950 227 / 3e-63 Ring/U-Box superfamily protein (.1) AT1G30860 94 / 1e-19 RING/U-box superfamily protein (.1) AT2G34920 94 / 1e-19 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT4G20160 60 / 5e-09 unknown protein AT2G38195 56 / 5e-08 RING/U-box superfamily protein (.1.2) AT2G38220 56 / 9e-08 RING/U-box superfamily protein (.1) AT5G19080 53 / 6e-07 RING/U-box superfamily protein (.1) AT3G23280 52 / 1e-06 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT1G59560 51 / 1e-06 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017455 [exp] 1259 / 0 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10038656 [exp] 967 / 0 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10037928 [exp] 948 / 0 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10021403 [exp] 367 / 2e-115 AT2G27950 470 / 5e-154 Ring/U-Box superfamily protein (.1) Lus10016162 [exp] 158 / 3e-41 AT2G27950 278 / 6e-85 Ring/U-Box superfamily protein (.1) Lus10036249 [exp] 64 / 4e-10 AT4G20160 182 / 3e-48 unknown protein Lus10038389 [exp] 63 / 5e-10 AT4G20160 155 / 2e-40 unknown protein Lus10003551 [exp] 54 / 7e-08 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10034030 [exp] 54 / 2e-07 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G030100 [exp] 899 / 0 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.010G231100 [exp] 882 / 0 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.004G217700 [exp] 274 / 8e-80 AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1) Potri.009G003500 [exp] 265 / 9e-77 AT2G27950 578 / 0.0 Ring/U-Box superfamily protein (.1) Potri.003G156400 [exp] 119 / 3e-27 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.001G074800 [exp] 111 / 8e-25 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 53 / 5e-07 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.005G225300 [exp] 52 / 1e-06 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.005G036400 [exp] 52 / 1e-06 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 52 / 2e-06 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028827 pacid=23177147 polypeptide=Lus10028827 locus=Lus10028827.g ID=Lus10028827.BGIv1.0 annot-version=v1.0 ATGACCGACTTGCAACCGGTACAACAAAAGCCAGAGTCCACCACAAACGATGCTGGTGTGGATTTTGAAGGGGGATGGGAGGAATTGATTCGAGGACCCT TAGATGAATGTACATCATTTGCGTCATGTAGCTCCGCTCGTACCCCGGATAGTGAGGATCATGAGGAGGGTGATCACCTTGTTCGAAGGAGACGAAGGTC TGATCTCGAAGGTGATGATTTGGCCGAGTCTTCAGCTGCTAGGAGGCGCCACTCCCGCATTCTCAGCAGGTGGGCTGCTCGGCAGGCGCAAGAGATGATC ACCACTATCGAGAGGAGGAATCGCGAGTCAGAGTTAATGGCGCTTGCTCGTCTTCACACGGTCTCCATGCTTGATTCCTCGTTTTTAAGGGAGTCGCAAT CGCCCCCTCCTACTTCCAGAAGGCAGGGTGCAGCAGCTGAACTGCCAAGCACTCGGGCATCGGCAATTCTGCAGATGTGGCGGGAGCTGGAGGATGAGCA TGTGTTGAACAGGGCCCGTGAGAGGGTGAGGGTGAGGGAAAGGTTAAGGCAACAAAGAAGTGTGGAATCTACTACCACGAATGCAAACATGTCCGAGACT CGAGGAAGTGAGGGATCCCCGACTCAGCCGGGAGATAATAATGACTCTGTTAGGGAGCAGTCTCCTGATCTTGGGGAAGTTGAGAGGGAGAGGGTGAGGC AGATTGTTCGAGGATGGATGGGCAGTGGTGTGAGTGATCATACATCTAATGTGTCCCAACGAAACGGAAATGCTAGAGCAGAATGGCTTGGTGAAACGGA ACGTGAGAGAGTGAGACTTGTGAGGGAGTGGGTGCAAATGACAAGTCAGCAACGTGGGGCCCGTGGGGGACGGAGGGCTGATCACGATGAAGTGCAACCA GAACACACCCGTAGGGATATGCTCAGGCTACGTGGTAGACAGGCAGTTATTGATTTGCTTATGAGGATTGAAAGGGATAGGCAGGGGGAGCTTCAGGGAT TGTCGGAACATAGAGCTGTTTCTGAATTTGCTCACCGCAATCGCATTCAGTCCCTATTGAGGGGTAGATTCCTCAGAAATGAAAGAATTTCCGAAGACGA GAGACCACCTTCAGTGGCTGCAAATGAATTACTCCATTTAAGACAACGTCACACTGTTTCTGGTATAAGGGAAGGGTTTCATTCAAGATCGGAAAATATT GTTCATGGTCAAGGTGTTCAACATGAAGATAATGTTCAATCTGAAACTAGGGCACAAGATGAGGCCCGCTCCTTACCTGATCAGCCTGACACCTCAGAAA CAAATGCTGCCGTTGATCATATCAATTGGCAGGGAAATGTTAATCAAGCTAGGGCTTGGCAGGAAGAGATTACGGATAATGTGGGAGGAAACTGGCAACA GTCGGATTATGGTCCTTTCAATGAGTGGAGAGATGACAGTGCTGAGCCTATGGATCGAAATTGGCAGCGTAATAGTGTTGACAATTGGCCTCCAGAAACA CCTGGTGATGTACATAATGAACCAGGCCACCTACAGGAAGCCCGGGGAGTCTGGCGTGAAGATGGCTCTCAGGAGGCGGTAGAAACGTGGATAGAGGGGC CTTCTGATCCACCAAGAGCTCGTCGTACTGTTCCATCTAGAAGGTTTAGTAGATTTCACCCATCAGATGATGAAAATGTGTACAGCATGGAGCTTAGGGA GTTATTGAGCAGGCGAAGTGTATCTAATCTGCTTCGGAGTGGGTTTCGCGAAAGCCTGGACCAATTGATACAATCATATGCGGAAAGACAAGGCCGTGGT CCAGTTGATTGGGATGTTCACAGAAACTTGCCTCCTTTACCAGAGCAGGATGAAGAGCAGCAGAGAGATGAACATCGTGAGGCTGTAAACAGACCTTCAC TGGTTCTTCCATCTCCACCAGTGCCTCCACCTCAGCCTCTTTGGCACCAGGATATACATCAGACTGGATGGTCTCGTCATAGCATGCATCGATCTGAACT CGAGTGGGAAACGATGAATGTCTTGAAAGCAGACATGGCTAGGCTTCAGCAAGGAATGACCCACATGCAGAAAATGGTGGAAGCTTGCATGGATATGCAA CTAGAACTCCAGCGTTCCGTTAGACAGGAAGTTTCTGCAGCTCTGAATCGATCCGCTGGTGAAAGAGGACTGAGTGCTGAGACATCAGAGGATGGCTCTA AATGGGGCAATGTGAAGAAAGGGACATGCTGCGTGTGTTGTGATAGTCACATAGATTCTTTATTGTACAGATGCGGGCACATGTGCACGTGTACGAAGTG TGCGAACGAACTGGTGCGTAGCGATGGTAAGTGTCCGCTGTGTCGAGCACCGATCGTGGAAGTGATAAGAGCATACTCAATACAGTAA
AA sequence Show only first row Show all	>Lus10028827 pacid=23177147 polypeptide=Lus10028827 locus=Lus10028827.g ID=Lus10028827.BGIv1.0 annot-version=v1.0 MTDLQPVQQKPESTTNDAGVDFEGGWEELIRGPLDECTSFASCSSARTPDSEDHEEGDHLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMI TTIERRNRESELMALARLHTVSMLDSSFLRESQSPPPTSRRQGAAAELPSTRASAILQMWRELEDEHVLNRARERVRVRERLRQQRSVESTTTNANMSET RGSEGSPTQPGDNNDSVREQSPDLGEVERERVRQIVRGWMGSGVSDHTSNVSQRNGNARAEWLGETERERVRLVREWVQMTSQQRGARGGRRADHDEVQP EHTRRDMLRLRGRQAVIDLLMRIERDRQGELQGLSEHRAVSEFAHRNRIQSLLRGRFLRNERISEDERPPSVAANELLHLRQRHTVSGIREGFHSRSENI VHGQGVQHEDNVQSETRAQDEARSLPDQPDTSETNAAVDHINWQGNVNQARAWQEEITDNVGGNWQQSDYGPFNEWRDDSAEPMDRNWQRNSVDNWPPET PGDVHNEPGHLQEARGVWREDGSQEAVETWIEGPSDPPRARRTVPSRRFSRFHPSDDENVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYAERQGRG PVDWDVHRNLPPLPEQDEEQQRDEHREAVNRPSLVLPSPPVPPPQPLWHQDIHQTGWSRHSMHRSELEWETMNVLKADMARLQQGMTHMQKMVEACMDMQ LELQRSVRQEVSAALNRSAGERGLSAETSEDGSKWGNVKKGTCCVCCDSHIDSLLYRCGHMCTCTKCANELVRSDGKCPLCRAPIVEVIRAYSIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04460			RING/U-box superfamily protein...		Lus10028827 [exp]	0	1
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10030491 [exp]	2.6	0.8285
AT5G04460			RING/U-box superfamily protein...		Lus10017455 [exp]	3.2	0.8108
AT3G24740			Protein of unknown function (D...		Lus10011876 [exp]	4.2	0.8049
AT3G26100			Regulator of chromosome conden...		Lus10006455 [exp]	5.3	0.7746
AT3G26100			Regulator of chromosome conden...		Lus10011399 [exp]	6.9	0.7590
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	17.2	0.7368
AT5G35460			unknown protein		Lus10017161 [exp]	18.3	0.7733
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	21.3	0.7480
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10039872 [exp]	32.6	0.6684
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	33.5	0.7365

Compare expression of checked genes

Lus10028827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.