Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52170 130 / 9e-32 DNA binding (.1.2) AT5G58210 63 / 4e-10 hydroxyproline-rich glycoprotein family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017453 [exp] 804 / 0 AT3G52170 133 / 2e-33 DNA binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G231900 [exp] 213 / 7e-60 AT3G52170 138 / 2e-35 DNA binding (.1.2) Potri.008G029500 [exp] 211 / 9e-60 AT3G52170 128 / 3e-32 DNA binding (.1.2) Potri.018G151900 [exp] 70 / 1e-12 AT5G58210 89 / 4e-20 hydroxyproline-rich glycoprotein family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028828 pacid=23177304 polypeptide=Lus10028828 locus=Lus10028828.g ID=Lus10028828.BGIv1.0 annot-version=v1.0 ATGCGTAACATAAGCGGTGGCCGTGTATATGGCCGGGTGCTCGCCCAAGCCTGGTCCACTAGTCAATCTGGACGATGGTTTTCATCATCCATCCGACGTT CAAGGGAGGAGAGGAAAGCCATGATTGAATCCTTCGTAAAGGAATATAAAAGGTCAAACAATGGAAGGTTTCCACCCATCACTGTGATCCTAAAAGAAGT TGGTGGTCGTTTCTATATCGTGCGCCACATTCTTCAAGAATTAAAAGTTACTTGGACACCAGATCAAGGATCCCAAACGGGTCCTGCCGATGAGTTTCCT CGAGGCGCAATATCCGAAACACCTCAATCTTCTGCGTCGTTGTCACCAAATGGAACAGTCCCAGAATCTGATGAGCATCCCAGATTGGATGGAGAAGGAG AACATCATCCTTCTAATGGCACTAGTACAGCATCTAAACAAGAGGTTATTGAGAATTCAATTCATGGACGTGAATTTCCGTCATCCATCAGGCATTCTAG GGAGGAGAGGAAAACCATTATTGAATCCTTCGTAATGGAGTATAAAGAGTCAAACAATGGGAGTTTTCCTCCCATCAATGTGATCCAGAAAGAAGTTGGT GGTGGTTTCCATGTCGTGCGCCACATTCTTCAAGAACTAAAAGCTACTTGGAGCCAGAATCAAGGATCCCAAACCGGTCCTTCTGATGAGTTTTCCCGAG GTAAAATATCCAAAAAACCTCGATCCTCTGCGTCTTTGATGAAAGGAACAGTGCCAGTATCTGATGACCATTCTAGGCTGGACGGAGAAGAGGAGCATCA TCCCATTTCTAATGGAATTAGTGGAGCATCTAAACAGGAGGTTATTGAGGATCCAATCGATGACGATTTGATAAACGTTGAGAATGTAGATTCTGATGAA TCAGAAGTGGTGGCTGGGACACTATCAGGTGGAAGTAGCGAGGGTGAGCATCTTATTGGCGGGAAGACCTTTGACATGAGAAATGATACTGAGATTGAAG GTAGTGGTAGATCGCTAGAAAACATGAAGCATGCTGAAGAGTTGCCGAAGGTAGTTGTAAGCACCCCTTCATTGGAAAACCAGAATTTTGTTGAACCTAT CACAGTTATTGAAAAGAGAGCACCTGAGGGGTCAGTGGTTCCTAAAGAGAACACAAGTGTAGAGACTATTACGGTGCCAACTAATGATAGGGAGGAAAAG GTTGAACTCGATACAAGAAACAAAGGTTCCAGATCAGATAAAGATGGATCTGTAGAGCAACCCTGTATCAAGAGTAACAAGGTGGAAACTGTTGTCCATA ACACGAGCGAAATTCTTGATGTCACTTCATCAAATCATCAACAAACAGGAACCTCAAACAATGTTCAGCACAGAAGCGATGCTCTACCCAGTATGCTGCG TGTTACGATTCCATTTCTAGGCGATGTTGAATTCGATTCTGATAACCACAGTTTAGAGGATTTTTTCATGCGGTCTATAGAGGTGTATGGTGGTGATAGA CGGCGTATAGCATATAGCACCATGCTTGCTATAAAGGGCAGCTGGGTTGGCCGAACATATGCTCTATCCAAGTCCAACGAGTCAGGCGGGAGGAAGGCTC GCATACGGCGTTCCAAGGAGGAAAGGAAGGGCATGGTTGAATTGTTTATAAAGAAGTATCAGAGCTTGCACAATGGGAACTTTCCTTCTCTTACTCTGAC TCAGAAGGAAGTTGGTGGGACATTCTACACTGTCCGCGAGATTGTACGAGAAATAATCCAAGAAAATCGGGTGTTGGGTCCTGGTAAGGTATTGCCCGAG GACCAAGACTCTCATGAGTGGTCGGATCAGTATCCCCTGGGCACAATATCGACAGAACCTCAGTCTTCTTCAGCTTTGATACCAGATGGAAATGTACTAT CACCTGATCAACATCAGAGCTCGCTACAAGAATTTTCATCCACTTATCATGGGCATGTTTCTGAAAATCAGAAGCACAAAGCTGAAGCTGGGCAAGATAT TAATGGGAGTTTTGTAATTGTTGGAGATGTTGAATCTCATCAAGAAAAGGTTCATGAGCTTCAACAAAAAGATAATGAAGTGGGTCCAACAGAAGATATA ATAGTAGGTGCTGATCCTTCAATAGATGATGCGTTTGTGAATCCAGTCTTCTCTGAAGTTCAGGTAGGTGAATCACTAGGAAACCACCTGTGTTTGGATG AAGTAGGGAATTCAGTCGCAGAGATAAATTCGCTGGAAGTTAAAGAATCTTATGAACAAATGGAAGCAAAAGTAGAAGATCAAGCAATAGCGATACAACG AAAACAGCCATGTTCGGATGAATTAGGGAATTCAGTCGAAGAGATAAACTCTCTGGAAGTTGAAGAATCTTATGAACAAATGGAAGCAATAGTAGAAGAA CAAACAATAAGGATACAGAATAGTGATAATGTGGGAAATGCAGTCATAGACAGTCAAGTGGTAGCAGAAGGTCAAGATATGGGAACAGCAAAAACTGATA ACGAAGTGGGTGGCTCAGTTGTACATAGCCCTTCCTCAGAAGTTGAAGCATCTAGAGAACAACTCCAAGCAGAAAATGTGGTAAAGCAACCGGAGGACAG TGTTTGTGCAGATAATAGTGTCAAAGTTGTGGGATCATCATCATCTAGGCCAAAAGTATTTCAAACAGAAGATGTCGTGGTGGAAACTTTTCCATTACGA CCCATTGTTTCAAGAACTGATGGTAATGGGGTAGTAAGTGGTTCAAATGGAACATGGGAAAGAAAGGATGCTGAGAAGGTTGAATCAGGGCCAAGTAAAG ATGGTTCAAGTTCATCTGTTGTAGATGATCTAGATAACGGCCAAATATCTTTGTTGGGAAAAAAGTCGGTCACAGCTGATGAGCAAGCGATTGCAAGTGG GGTTGCTTCAACGATGGATGGCTCTGATAGTGGTGAAGTGAAGTCAAAGTTATCTAATGACCAGGTGACTCACGAAGCTTCTTTTATGTTTTTTGGCCTG GCTATAGTTTTCTTTCTTGGCCTTCTTTTGGAGGCTTTTTCGATGTGA
AA sequence Show only first row Show all	>Lus10028828 pacid=23177304 polypeptide=Lus10028828 locus=Lus10028828.g ID=Lus10028828.BGIv1.0 annot-version=v1.0 MRNISGGRVYGRVLAQAWSTSQSGRWFSSSIRRSREERKAMIESFVKEYKRSNNGRFPPITVILKEVGGRFYIVRHILQELKVTWTPDQGSQTGPADEFP RGAISETPQSSASLSPNGTVPESDEHPRLDGEGEHHPSNGTSTASKQEVIENSIHGREFPSSIRHSREERKTIIESFVMEYKESNNGSFPPINVIQKEVG GGFHVVRHILQELKATWSQNQGSQTGPSDEFSRGKISKKPRSSASLMKGTVPVSDDHSRLDGEEEHHPISNGISGASKQEVIEDPIDDDLINVENVDSDE SEVVAGTLSGGSSEGEHLIGGKTFDMRNDTEIEGSGRSLENMKHAEELPKVVVSTPSLENQNFVEPITVIEKRAPEGSVVPKENTSVETITVPTNDREEK VELDTRNKGSRSDKDGSVEQPCIKSNKVETVVHNTSEILDVTSSNHQQTGTSNNVQHRSDALPSMLRVTIPFLGDVEFDSDNHSLEDFFMRSIEVYGGDR RRIAYSTMLAIKGSWVGRTYALSKSNESGGRKARIRRSKEERKGMVELFIKKYQSLHNGNFPSLTLTQKEVGGTFYTVREIVREIIQENRVLGPGKVLPE DQDSHEWSDQYPLGTISTEPQSSSALIPDGNVLSPDQHQSSLQEFSSTYHGHVSENQKHKAEAGQDINGSFVIVGDVESHQEKVHELQQKDNEVGPTEDI IVGADPSIDDAFVNPVFSEVQVGESLGNHLCLDEVGNSVAEINSLEVKESYEQMEAKVEDQAIAIQRKQPCSDELGNSVEEINSLEVEESYEQMEAIVEE QTIRIQNSDNVGNAVIDSQVVAEGQDMGTAKTDNEVGGSVVHSPSSEVEASREQLQAENVVKQPEDSVCADNSVKVVGSSSSRPKVFQTEDVVVETFPLR PIVSRTDGNGVVSGSNGTWERKDAEKVESGPSKDGSSSSVVDDLDNGQISLLGKKSVTADEQAIASGVASTMDGSDSGEVKSKLSNDQVTHEASFMFFGL AIVFFLGLLLEAFSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	0	1
AT3G19508			unknown protein		Lus10013875 [exp]	1.0	0.8332
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Lus10003791 [exp]	1.4	0.8195
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10003098 [exp]	1.7	0.8111
AT5G44000			Glutathione S-transferase fami...		Lus10038943 [exp]	3.0	0.7701
AT5G43822			Pentatricopeptide repeat (PPR)...		Lus10030735 [exp]	3.5	0.7974
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10026218 [exp]	5.3	0.7497
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10014490 [exp]	9.7	0.7402
AT2G40760			Rhodanese/Cell cycle control p...		Lus10029020 [exp]	9.8	0.7482
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	11.0	0.8026
AT5G55220			trigger factor type chaperone ...		Lus10000783 [exp]	12.0	0.8008

Compare expression of checked genes

Lus10028828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.