Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04480 1177 / 0 UDP-Glycosyltransferase superfamily protein (.1.2) AT4G01210 622 / 0 glycosyl transferase family 1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017452 [exp] 1943 / 0 AT5G04480 1202 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10008732 [exp] 692 / 0 AT4G01210 1264 / 0.0 glycosyl transferase family 1 protein (.1) Lus10002154 [exp] 690 / 0 AT4G01210 1268 / 0.0 glycosyl transferase family 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G232000 [exp] 1352 / 0 AT5G04480 1229 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.008G029400 [exp] 1329 / 0 AT5G04480 1237 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G166100 [exp] 692 / 0 AT4G01210 1168 / 0.0 glycosyl transferase family 1 protein (.1) Potri.014G092500 [exp] 689 / 0 AT4G01210 1237 / 0.0 glycosyl transferase family 1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10028829 pacid=23177113 polypeptide=Lus10028829 locus=Lus10028829.g ID=Lus10028829.BGIv1.0 annot-version=v1.0 ATGTTTCGATACTCTCTGCCGCCTGAAGTCGACGAAGCTGCCGCCGGACCCACTAGCCCTCCTTCCAACGCCGACGCCACCACCGCCGATCAGAATTCTC ACTCGATCCGTGATCGTCTCCGTTTCAAGCGCAACACTAACCACCTCGCATCTTCCTCCGCCACCACTTCCGGCCGCGGCTCCAAATCTAGAGAAGATCG CGCTTCTCGCAGATGGCATCACCACCACGGGACTTGCCGGCGGAAGAGCTGGTTCGCATTCCGCGGAGTTTATCTCTTCTACTTCGTCATCGTTTTCACG GTTTTCGCTTTCGCCATGGGGGCGATGCTGTTGCAGAGCTCCATTACTTCGATGGTGTTCAGTAGAGGATGGACCGAGCAAAGGAGATCGGTTAGGGAAG GGCTCAGGTTGGGGACGACGTTGAAATTTGTACCTGGAATAAGGTCGCGGCGGCTGGTTGAGGGGCCTGGACTTGATCAAATCAGAATGCAGCAGAGTGT TAGGGTGGGCCTCCGGTCCCCCAGGCTTGCTTTCGTTTTAGGAAATGTGAAGACAAATCCACAGTTGTTGATGTTGGTTACAATAATGAAGAATCTGAAG AAACTTGGCTATGCACTTCAGATCTATGCACCCGAAAATGGAAGAACACAGGCAGTCTTGGAGCAAACTGGTGGCCAGATATCAATACTACCAGCTGAGA ACTACAATACTGTCGACTGGTCAATGTTTGATGGTATCATCATGGATTCGCTCCAAGCAGAAAAAGCTATGCCAAGCTTGGGAATCTATGGATTCAACAT ATACTGGCAAGAGCCCGATGCCTTAATGTTTCTAGTGGAGCCTTTCTGCTCAATACCAGTCATCTGGATAATACAGGAAGATGTGCTTGCTAATCGTCTT TTACCGTATGAGGAAATGGGCTGGACAAAGCTTGTGACTTACTGGAGGAGTGCGTTTAGCAGAGCTAGTCTTGTAGTTTTTCCAGATTTCACTCTTCCGA TGCTATACAGTGTGATCGACCCTGGAAACTTCTTTGTGGTTCCTGGATCACCGGTAGATGTTTGGGCCGCTGAAATTTACAGGAAGACCCATGACAAACA TCAGCTGAGGGTGGACAATGGATTTGAGAAAGCAGATATTGTAGTTTTAGTTGTTGGGAGTTCCTTCTTCTACAATGAATTATCTTGGGACTATGCTGTC GCAATGCATTCCCTAGGTCCCTTACTTAGCAAATATGCCAGAAGAAGTGATGCTGAAGGATCATTTAAATTTGTTTTCTTGTGCGGTAATTCAACTGATG GTGGCGCTGTACAGGAAGTCGCTTCTCGTTTGGGACTTATTCATGGTTCCGTTAGGCATTATGGTCTGCATGGTGATGTCAATAGTGTATTGTTAATGGC AGACATAGTTGTTTATGGTTCTTCTCAGGATGAACAGGGGTTTCCTCCTTTGATTGTCCGGGCCATGACCTTTGGAATTCCTGTCCTGACACCTGAAACC TCCATGATGAAAAAATATGTCACTGATGAAGCCCATGTCCTGTTTTTCCCAAAGTATGATCCTGAAGCTTTGATGAGGACTTTCTCTCTTTTGATATCAG ATGGAACTATTTCCAAACTTGCCAGAACTCTTTCTGTCTCTGGACGACTATTTGCTAAAAACATGCTTGCAACTGAATGCGTATCTGGTTACGCAAAGCT CTTAGAGAACATTCTTAGCTACCCCTCGGATACTTTGCTCCCAGCTTCTGTGAGTCGGCTTCAAGAGATCACGTGGGAATGGGCTTTGTTTGGTGAGATA GAAGAGGAAGCTGCTGACTATAATATCAGAGGTTCGGATGTCGTTCAGTATCTTGAAACAGAGGCTTGGGACCTTGTCACATCTACAAATATCTCTGGTA ATACAACCAATATATGGGCGCCAGATAGTGTGATGAAGTCAGATTGGGATGTTTTGAACGAAATAGAAAATTATGAAGAATTCGAGACTGTAGAGTTGCA ACAGGTTGAGGAACGGATGGACAAACACCCAGGCGTGTGGGATGAGATATACCGCAATGCACGAAAAGCTGAAAAACTAAAGTTTGAAGCAAACGAAAGG GATGAGGGAGAGCTAGAGCGGACAGGGCAACCAGTATGTATCTATGAGATATATCCTGGAGCTGGGGCCTGGTCCTTCTTGCACCATGGTTCCTTATACC GTGGTCTAAGTCTTTCCACAAGGGCCCTTAGACCAAGATCAGACGATGTGGATGCAGTTGCCCGGCTTCCTCTCTTGAATGACTCATATTATCGAAACGT ATTGTGCGAGATGGGTGGAATGTTTTCAATTGCAAATAAGGTGGATAACATCCACAAGAGACCTTGGATTGGGTTTCAGTCTTGGCGTACCACAGATAGG AAGGTTTCACTATCTCCCAACGCTGAAAGAGTTATGGAAGAGAAAATAAAGAAAGAGACTGTGGGAGACGTAATATACTTCTGGGCCAAATTAGACATGG ATTACGAAGCCACGGGAAGCAGTGGCGAACTATCTTTCTGGTCCTTCTGTGACGTGTTAAATGCAGGACGCTGCAGAACAACTTTTGAAGATGCATTCCG CCAGATGTTTTCCCTGCCATCGCATCTAGAAGGTCTTCCTCCTATGCCGGAGGATCATGGTCATTGGTCTGCTTTGCATAGCTGGGTGATGCCAACCCCT TCATTTTTGGAGTTCATCATGTTTTCCAGAATGTTTGTCGATTCATTGGACTCATTGCAAGCCAGTTCCGGCGTAGCATGTCTGTTGAGTTCCTCAGAAG TTGAGGAAAAACACTGCTACTGTCGAATAATGGAGATACTCGTGAATGTATGGGCTTACCAAAGTGGAAGAAAGATGGTCTACATAGATCCAGTATCCGG CAATCTCGAAGAGCAGCACTTACTCGAACAACGAAAGGGGACTATATGGGCAAGATATTTTAACCTGACATTGCTGAAGAGCATGGATGAAGATCTTGCT GAGGCTGCTGACGACGGCGACCTGGCGAGGGAAAGATGGCTATGGCCGTTAACAGGGGAAGTTCATTGGCAAGGGATCTACGAGAGGGAAAGAGTGGAAC GGTATCGACAGAAAATGGACAAGAAGAGGAAACATAAAGAGAAACTGGCGGAGAGAAGTAGGATAGGATACAAGCAGAAACCACTCCTAAGATAA
AA sequence Show only first row Show all	>Lus10028829 pacid=23177113 polypeptide=Lus10028829 locus=Lus10028829.g ID=Lus10028829.BGIv1.0 annot-version=v1.0 MFRYSLPPEVDEAAAGPTSPPSNADATTADQNSHSIRDRLRFKRNTNHLASSSATTSGRGSKSREDRASRRWHHHHGTCRRKSWFAFRGVYLFYFVIVFT VFAFAMGAMLLQSSITSMVFSRGWTEQRRSVREGLRLGTTLKFVPGIRSRRLVEGPGLDQIRMQQSVRVGLRSPRLAFVLGNVKTNPQLLMLVTIMKNLK KLGYALQIYAPENGRTQAVLEQTGGQISILPAENYNTVDWSMFDGIIMDSLQAEKAMPSLGIYGFNIYWQEPDALMFLVEPFCSIPVIWIIQEDVLANRL LPYEEMGWTKLVTYWRSAFSRASLVVFPDFTLPMLYSVIDPGNFFVVPGSPVDVWAAEIYRKTHDKHQLRVDNGFEKADIVVLVVGSSFFYNELSWDYAV AMHSLGPLLSKYARRSDAEGSFKFVFLCGNSTDGGAVQEVASRLGLIHGSVRHYGLHGDVNSVLLMADIVVYGSSQDEQGFPPLIVRAMTFGIPVLTPET SMMKKYVTDEAHVLFFPKYDPEALMRTFSLLISDGTISKLARTLSVSGRLFAKNMLATECVSGYAKLLENILSYPSDTLLPASVSRLQEITWEWALFGEI EEEAADYNIRGSDVVQYLETEAWDLVTSTNISGNTTNIWAPDSVMKSDWDVLNEIENYEEFETVELQQVEERMDKHPGVWDEIYRNARKAEKLKFEANER DEGELERTGQPVCIYEIYPGAGAWSFLHHGSLYRGLSLSTRALRPRSDDVDAVARLPLLNDSYYRNVLCEMGGMFSIANKVDNIHKRPWIGFQSWRTTDR KVSLSPNAERVMEEKIKKETVGDVIYFWAKLDMDYEATGSSGELSFWSFCDVLNAGRCRTTFEDAFRQMFSLPSHLEGLPPMPEDHGHWSALHSWVMPTP SFLEFIMFSRMFVDSLDSLQASSGVACLLSSSEVEEKHCYCRIMEILVNVWAYQSGRKMVYIDPVSGNLEEQHLLEQRKGTIWARYFNLTLLKSMDEDLA EAADDGDLARERWLWPLTGEVHWQGIYERERVERYRQKMDKKRKHKEKLAERSRIGYKQKPLLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04480			UDP-Glycosyltransferase superf...		Lus10028829 [exp]	0	1
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	6.1	0.9209
AT5G54200			Transducin/WD40 repeat-like su...		Lus10039934 [exp]	6.7	0.9116
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	8.1	0.8920
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	8.5	0.9160
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	12.4	0.8950
AT5G11700			unknown protein		Lus10005497 [exp]	13.3	0.8885
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10018129 [exp]	16.1	0.8654
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	17.2	0.8958
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	22.9	0.8904
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001428 [exp]	23.2	0.8720

Compare expression of checked genes

Lus10028829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.