Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04520 465 / 7e-167 Protein of unknown function DUF455 (.1) AT1G06240 144 / 4e-40 Protein of unknown function DUF455 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017450 [exp] 390 / 8e-138 AT5G04520 351 / 6e-123 Protein of unknown function DUF455 (.1) Lus10017666 [exp] 158 / 2e-45 AT1G06240 489 / 1e-173 Protein of unknown function DUF455 (.1) Lus10033620 [exp] 96 / 3e-22 AT1G06240 303 / 2e-101 Protein of unknown function DUF455 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G233000 [exp] 482 / 2e-173 AT5G04520 491 / 5e-177 Protein of unknown function DUF455 (.1) Potri.019G090600 [exp] 157 / 2e-45 AT1G06240 436 / 1e-152 Protein of unknown function DUF455 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF04305 [flax] [poplar] DUF455 Protein of unknown function (DUF455)
Representative CDS sequence Show only first row Show all	>Lus10028831 pacid=23177302 polypeptide=Lus10028831 locus=Lus10028831.g ID=Lus10028831.BGIv1.0 annot-version=v1.0 ATGAGTTCACTCGAAACAGATACCCTAGTCGAAGCGGCCCTCCTGATCCTCAACACACCCGACCCGTTTGAGAAGGCACGATTGGGCGAATGGGTTGCTT CTCAATGGCTCAAAGGCTCCATCTTTCGGCCTTACGACCCCAATCTCGCCTTCCCAGTCCCTGACCGTCCTGCCCGGCTCTCCGACGTTAAGTTGGTGGC ACCTGGTTTAATGCCGAAGCTCGGCAAAGCTGGTAGCCTGCAGAGTAGACGGACTATTGTCCATAGCCTTGCTCACACCGAAAGCTGGGCCATTGACCTC TCCTGGGATATAATTGCTCGGTTTGGGAAGCAAGAGGCAATGCCGATAGAATTCTTTACAGATTTCGTAAAGGTAGCTCAGGATGAGGGAAGGCACTTCA CTCTCCTTGCTAAACGTCTTGAGGAACTTGGCTCTTCTTATGGAGCGTTACCTGCTCATGATGGCCTTTGGGACTCTGCTATGGCGACATCCAAGAGTCT GTTAACTCGTCTGGCCGTAGAGCATTGCGTTCATGAGGCCAGGGGACTTGACGTGCTGCCAACAACCATCTCTCGATTCCGGAACGGAGGTGACAACGAA ACTGCTGATCTATTGGAGAAGGTCATTTACCCTGAAGAAATCACGCATTGCGCAGCTGGAGTCAGGTGGTTCAAGTTCCTCTGCTCAAGGTCGACTTCTC CGTCTTTGATCGAAGGGAGAGAAGAACCCGATAACACCGAAGAGGAAGAAGAGGAAGAGGCAGTAATCCGGAAATTCCATTCGGTTGTTAGAACTCACTT CAGAGGACCTCTGAAGCCACCATTTAACGCTGAAGCAAGAAAAGCTGCTGGATTCGGCCCTCAATGGTACGAACCACTTGCCATTAAAGCATTCGCTAAA GAACCTGAATAG
AA sequence Show only first row Show all	>Lus10028831 pacid=23177302 polypeptide=Lus10028831 locus=Lus10028831.g ID=Lus10028831.BGIv1.0 annot-version=v1.0 MSSLETDTLVEAALLILNTPDPFEKARLGEWVASQWLKGSIFRPYDPNLAFPVPDRPARLSDVKLVAPGLMPKLGKAGSLQSRRTIVHSLAHTESWAIDL SWDIIARFGKQEAMPIEFFTDFVKVAQDEGRHFTLLAKRLEELGSSYGALPAHDGLWDSAMATSKSLLTRLAVEHCVHEARGLDVLPTTISRFRNGGDNE TADLLEKVIYPEEITHCAAGVRWFKFLCSRSTSPSLIEGREEPDNTEEEEEEEAVIRKFHSVVRTHFRGPLKPPFNAEARKAAGFGPQWYEPLAIKAFAK EPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04520			Protein of unknown function DU...		Lus10028831 [exp]	0	1
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10016137 [exp]	2.4	0.9401
AT1G79220			Mitochondrial transcription te...		Lus10031184 [exp]	4.0	0.9169
AT2G03880		REME1	required for efficiency of mit...		Lus10001617 [exp]	10.5	0.9129
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	10.6	0.9334
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	11.7	0.9368
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	12.7	0.9126
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	13.7	0.9285
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10035459 [exp]	13.8	0.9137
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10035646 [exp]	14.3	0.9285
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10039874 [exp]	14.5	0.9296

Compare expression of checked genes

Lus10028831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.